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Report for CCDS33566.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33566.1 Public Homo sapiens 21 UBASH3A 24 110 108 CCDS HistoryNCBI Gene:53347Re-query CCDS DB by CCDS ID:33566.1Re-query CCDS DB by GeneID:53347See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33566.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291535.11 ENSP00000291535.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000291535.11Link to Ensembl Protein Viewer:ENSP00000291535.6Re-query CCDS DB by Nucleotide ID:ENST00000291535Re-query CCDS DB by Protein ID:ENSP00000291535
Original member Current member NCBI NM_001001895.3 NP_001001895.1 Accepted alive Link to Nucleotide Sequence:NM_001001895.3Link to Protein Sequence:NP_001001895.1Re-query CCDS DB by Nucleotide ID:NM_001001895Re-query CCDS DB by Protein ID:NP_001001895Link to BLAST:NP_001001895.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001895.1 623 P57075-2 623 100% 0 0

Chromosomal Locations for CCDS 33566.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 42403946 42404058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42406308 42406361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42409422 42409608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42413024 42413222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42416442 42416611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42418401 42418609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42426697 42426820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42432103 42432202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42434832 42434954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42437488 42437580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42442452 42442596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42443312 42443418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42444534 42444643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42447057 42447194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGGCAGCGGGGGAGACGCAGCTCTACGCCAAGGTCTCCAACAAGCTCAAGAGCCGCAGCAGCCCCTCGC
TCCTGGAGCCCCTCCTGGCCATGGGCTTCCCGGTGCACACCGCGCTGAAAGCGTTGGCAGCCACGGGGAG
GAAGACGGCGGAGGAGGCCTTGGCCTGGCTGCATGATCATTGCAATGACCCTTCCCTAGACGACCCCATC
CCCCAGGAGTATGCCCTTTTCCTCTGTCCAACGGGGCCCCTGCTGGAAAAACTTCAAGAGTTCTGGAGAG
AGAGCAAGCGCCAGTGTGCAAAGAACAGAGCTCATGAGGTCTTCCCACACGTGACACTCTGTGACTTCTT
CACGTGTGAAGACCAGAAGGTGGAATGCCTGTACGAGGCGCTGAAGAGAGCTGGAGACAGGCTCCTGGGC
TCCTTCCCCACGGCCGTGCCTCTGGCTCTCCACTCCTCCATCAGCTACCTCGGCTTCTTCGTCAGTGGCA
GCCCCGCAGACGTCATCCGGGAATTCGCCATGACCTTCGCCACGGAAGCATCTCTCTTAGCAGACTGCTC
CGTGAAGCCTTGCACCAAACAGCTGCATCTGACCTTGGCCCACAAGTTCTACCCCCACCACCAGAGGACG
CTGGAGCAGCTGGCCAGAGCCATCCCCCTGGGCCACAGCTGCCAGTGGACCGCAGCACTCTACTCCCGAG
ACATGCGCTTTGTGCACTACCAGACCCTGAGAGCCCTATTCCAGTACAAACCCCAGAACGTGGATGAGCT
GACGCTAAGTCCTGGTGACTACATCTTTGTGGACCCCACGCAGCAGGACGAAGCCAGCGAGGGCTGGGTG
ATTGGGATCTCACAGCGGACGGGCTGCCGGGGCTTCCTGCCGGAAAACTACACGGATCGAGCCAGTGAGT
CTGACACGTGGGTGAAGCACAGGATGTACACCTTCAGTCTAGCCACAGACCTGAACTCCAGAAAGGATGG
TGAAGCCAGCAGCAGATGCAGCGGGGAATTTCTTCCACAAACGGCAAGGAGTCTTAGCAGCTTACAGGCC
TTGCAGGCTACCGTTGCAAGGAAGAGCGTGCTGGTGGTTCGCCACGGGGAGAGAGTGGATCAGATCTTCG
GGAAGGCATGGCTGCAGCAATGCTCCACTCCTGATGGGAAATACTACAGGCCAGACCTGAATTTCCCCTG
CAGTCTGCCAAGACGGAGTCGTGGGATCAAAGACTTTGAAAACGATCCCCCATTATCATCGTGTGGCATT
TTCCAGTCCAGAATTGCAGGGGACGCGCTACTGGACAGTGGTATCAGAATCAGCTCTGTGTTTGCCTCCC
CAGCCCTCCGCTGTGTGCAGACGGCCAAACTCATCCTGGAAGAACTCAAACTGGAGAAAAAAATCAAGAT
ACGAGTGGAACCTGGAATCTTTGAATGGACAAAATGGGAAGCTGGCAAAACCACCCCAACCCTCATGAGC
CTGGAAGAGCTGAAAGAGGCAAATTTCAACATTGACACTGATTACAGGCCCGCGTTTCCCCTGTCCGCCC
TCATGCCGGCCGAGAGCTACCAGGAGTACATGGACAGGTGCACGGCGAGCATGGTGCAAATCGTCAACAC
CTGTCCACAGGACACGGGTGTCATCCTAATTGTGAGTCACGGCTCCACTCTGGACTCCTGCACGCGGCCA
CTGCTCGGGCTGCCGCCCCGGGAATGTGGGGATTTTGCCCAACTCGTGAGAAAGATCCCTTCCCTGGGCA
TGTGCTTCTGTGAAGAAAATAAAGAGGAAGGAAAATGGGAGTTGGTGAACCCACCGGTGAAGACCCTGAC
CCACGGGGCGAACGCAGCATTTAACTGGAGGAACTGGATCTCAGGCAACTGA

Translation (623 aa):
MAAGETQLYAKVSNKLKSRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPI
PQEYALFLCPTGPLLEKLQEFWRESKRQCAKNRAHEVFPHVTLCDFFTCEDQKVECLYEALKRAGDRLLG
SFPTAVPLALHSSISYLGFFVSGSPADVIREFAMTFATEASLLADCSVKPCTKQLHLTLAHKFYPHHQRT
LEQLARAIPLGHSCQWTAALYSRDMRFVHYQTLRALFQYKPQNVDELTLSPGDYIFVDPTQQDEASEGWV
IGISQRTGCRGFLPENYTDRASESDTWVKHRMYTFSLATDLNSRKDGEASSRCSGEFLPQTARSLSSLQA
LQATVARKSVLVVRHGERVDQIFGKAWLQQCSTPDGKYYRPDLNFPCSLPRRSRGIKDFENDPPLSSCGI
FQSRIAGDALLDSGIRISSVFASPALRCVQTAKLILEELKLEKKIKIRVEPGIFEWTKWEAGKTTPTLMS
LEELKEANFNIDTDYRPAFPLSALMPAESYQEYMDRCTASMVQIVNTCPQDTGVILIVSHGSTLDSCTRP
LLGLPPRECGDFAQLVRKIPSLGMCFCEENKEEGKWELVNPPVKTLTHGANAAFNWRNWISGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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