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Report for CCDS6293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6293.1 Public Homo sapiens 8 ODF1 24 110 108 CCDS HistoryNCBI Gene:4956Re-query CCDS DB by CCDS ID:6293.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6293.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000285402.4 ENSP00000285402.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000285402.4Link to Ensembl Protein Viewer:ENSP00000285402.3Re-query CCDS DB by Nucleotide ID:ENST00000285402Re-query CCDS DB by Protein ID:ENSP00000285402
Original member Current member NCBI NM_024410.4 NP_077721.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024410.4Link to Protein Sequence:NP_077721.2Re-query CCDS DB by Nucleotide ID:NM_024410Re-query CCDS DB by Protein ID:NP_077721Link to BLAST:NP_077721.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077721.2 250 Q14990 250 100% 0 0

Chromosomal Locations for CCDS 6293.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 102551728 102552047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 102560452 102560884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGCTGCACTGAGTTGTCTCTTGGACAGTGTCAGAAGGGACATAAAGAAGGTGGACAGAGAACTAAGGC
AACTGAGATGCATCGACGAATTTAGCACACGGTGCCTGTGCGACTTGTATATGCACCCCTATTGCTGCTG
TGACTTGCACCCATATCCGTACTGCTTGTGCTATTCCAAGCGATCACGCTCTTGCGGCCTGTGTGATCTC
TACCCATGTTGCCTGTGTGATTATAAGCTTTACTGTCTGCGACCATCTCTCAGAAGTTTGGAGAGGAAAG
CCATCAGAGCCATAGAAGATGAGAAGCGAGAGCTTGCCAAACTGAGAAGAACAACAAATAGAATTCTGGC
TTCCTCCTGCTGTAGCAGTAACATTTTAGGATCGGTGAATGTATGCGGTTTTGAACCCGATCAAGTCAAA
GTTCGAGTGAAGGATGGAAAGGTATGTGTGTCGGCTGAGCGGGAGAACAGGTACGACTGCCTTGGATCGA
AAAAGTACAGCTACATGAACATCTGCAAAGAGTTCAGCTTGCCGCCCTGTGTGGATGAGAAGGATGTAAC
ATACTCCTATGGGCTCGGCAGCTGTGTCAAGATCGAGTCTCCTTGCTACCCTTGCACTTCTCCTTGCAGC
CCCTGCAGCCCCTGCAGCCCCTGCAACCCCTGCAGCCCCTGCAACCCGTGCAGCCCATATGATCCTTGCA
ACCCGTGTTATCCCTGTGGAAGCCGATTTTCCTGTAGGAAGATGATTTTGTAA

Translation (250 aa):
MAALSCLLDSVRRDIKKVDRELRQLRCIDEFSTRCLCDLYMHPYCCCDLHPYPYCLCYSKRSRSCGLCDL
YPCCLCDYKLYCLRPSLRSLERKAIRAIEDEKRELAKLRRTTNRILASSCCSSNILGSVNVCGFEPDQVK
VRVKDGKVCVSAERENRYDCLGSKKYSYMNICKEFSLPPCVDEKDVTYSYGLGSCVKIESPCYPCTSPCS
PCSPCSPCNPCSPCNPCSPYDPCNPCYPCGSRFSCRKMIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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