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Report for CCDS16172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16172.1 Public Mus musculus 2 Pde1a 23 108 98 CCDS HistoryNCBI Gene:18573Re-query CCDS DB by CCDS ID:16172.1Re-query CCDS DB by GeneID:18573See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102653.7 ENSMUSP00000099713.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102653.7Link to Ensembl Protein Viewer:ENSMUSP00000099713.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102653Re-query CCDS DB by Protein ID:ENSMUSP00000099713
Original member Current member EBI ENSMUST00000102654.10 ENSMUSP00000099714.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102654.10Link to Ensembl Protein Viewer:ENSMUSP00000099714.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102654Re-query CCDS DB by Protein ID:ENSMUSP00000099714
Original member Current member EBI ENSMUST00000102655.9 ENSMUSP00000099715.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102655.9Link to Ensembl Protein Viewer:ENSMUSP00000099715.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102655Re-query CCDS DB by Protein ID:ENSMUSP00000099715
Original member Current member EBI ENSMUST00000183775.7 ENSMUSP00000139327.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183775.7Link to Ensembl Protein Viewer:ENSMUSP00000139327.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183775Re-query CCDS DB by Protein ID:ENSMUSP00000139327
Original member NCBI NM_001159582.1 NP_001153054.1 Updated not alive Link to Nucleotide Sequence:NM_001159582.1Link to Protein Sequence:NP_001153054.1Re-query CCDS DB by Nucleotide ID:NM_001159582Re-query CCDS DB by Protein ID:NP_001153054
Current member NCBI NM_001159582.2 NP_001153054.1 Accepted alive Link to Nucleotide Sequence:NM_001159582.2Link to Protein Sequence:NP_001153054.1Re-query CCDS DB by Nucleotide ID:NM_001159582Re-query CCDS DB by Protein ID:NP_001153054Link to BLAST:NP_001153054.1
Original member NCBI NM_001355140.1 NP_001342069.1 Updated not alive Link to Nucleotide Sequence:NM_001355140.1Link to Protein Sequence:NP_001342069.1Re-query CCDS DB by Nucleotide ID:NM_001355140Re-query CCDS DB by Protein ID:NP_001342069
Current member NCBI NM_001355140.2 NP_001342069.1 Accepted alive Link to Nucleotide Sequence:NM_001355140.2Link to Protein Sequence:NP_001342069.1Re-query CCDS DB by Nucleotide ID:NM_001355140Re-query CCDS DB by Protein ID:NP_001342069Link to BLAST:NP_001342069.1
Original member NCBI NM_001355141.1 NP_001342070.1 Updated not alive Link to Nucleotide Sequence:NM_001355141.1Link to Protein Sequence:NP_001342070.1Re-query CCDS DB by Nucleotide ID:NM_001355141Re-query CCDS DB by Protein ID:NP_001342070
Current member NCBI NM_001355141.2 NP_001342070.1 Accepted alive Link to Nucleotide Sequence:NM_001355141.2Link to Protein Sequence:NP_001342070.1Re-query CCDS DB by Nucleotide ID:NM_001355141Re-query CCDS DB by Protein ID:NP_001342070Link to BLAST:NP_001342070.1
Original member NCBI NM_016744.4 NP_058024.2 Updated not alive Link to Nucleotide Sequence:NM_016744.4Link to Protein Sequence:NP_058024.2Re-query CCDS DB by Nucleotide ID:NM_016744Re-query CCDS DB by Protein ID:NP_058024
Current member NCBI NM_016744.5 NP_058024.2 Accepted alive Link to Nucleotide Sequence:NM_016744.5Link to Protein Sequence:NP_058024.2Re-query CCDS DB by Nucleotide ID:NM_016744Re-query CCDS DB by Protein ID:NP_058024Link to BLAST:NP_058024.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153054.1 545 Q61481-4 545 100% 0 0
NP_001342069.1 545 Q61481-4 545 100% 0 0
NP_001342070.1 545 Q61481-4 545 100% 0 0
NP_058024.2 545 Q61481-4 545 100% 0 0

Chromosomal Locations for CCDS 16172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 79838928 79839001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79865038 79865225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79865622 79865742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79868230 79868311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79875003 79875123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79875229 79875330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79878123 79878248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79887841 79887941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79897065 79897205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79898066 79898182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79901812 79901878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79905990 79906172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79927675 79927788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 80128734 80128834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGGGGTCTACTGATACGGACATCGAAGAATTGGAAAACGCCACTTACAAGTATCTCATTGGAGAACAGA
CCGAGAAGATGTGGCAGCGCCTGAAGGGAATACTAAGATGCTTAGTGAAGCAGCTGGAGAAAGGTGATGT
CAACGTTGTTGACCTAAAGAAGAATATCGAATATGCAGCATCAGTACTGGAAGCTGTTTACATCGATGAG
ACAAGAAGACTGCTGGACACAGAGGATGAACTCAGCGACATCCAGACTGACTCCGTCCCATCGGAAGTCC
GGGATTGGTTGGCTTCAACTTTCACACGCAAAATGGGGATGATGAAAAAGAAGCCTGAAGAAAAACCAAA
GTTTCGCAGCATTGTCCATGCTGTCCAGGCTGGGATTTTTGTGGAAAGGATGTACAGGAAGAACTATCAC
ATGGTTGGTTTGACATATCCTGCAGCTGTCATAGTGACACTCAAGGAAGTTGATAAATGGTCTTTTGATG
TATTTGCCTTAAATGAAGCAAGCGGGGAGCATAGCCTGAAGTTTATGATTTATGAACTCTTTACCAGATA
TGATCTTATCAACCGCTTCAAGATTCCTGTTTCTTGCCTAATTGCCTTTGCAGAAGCCTTAGAAGTTGGT
TACAGCAAGCACAAAAATCCATATCATAATTTGGTCCATGCAGCTGACGTCACTCAAACTGTGCATTATA
TAATGCTTCATACAGGTATCATGCACTGGCTCACTGAACTGGAAATTTTAGCCATGGTCTTTGCAGCTGC
CATTCATGATTATGAGCACACAGGAACAACAAACAACTTCCATATTCAGACGAGGTCGGACGTTGCTATT
CTGTACAACGACCGCTCAGTGCTTGAGAATCACCACGTCAGCGCAGCCTACAGACTTATGCAAGAGGAGG
AAATGAATATTTTGGTAAATTTGTCTAAAGATGACTGGAGGGATCTTCGGAACTTAGTGATTGAAATGGT
CTTAGCGACAGACATGTCAGGGCATTTTCAGCAAATTAAAAACATAAGAAACAGCTTGCAGCAGCCGGAA
GGGATTGACAGAGCCAAAACTATGTCCCTGATACTCCATGCAGCTGACATCAGCCACCCAGCCAAAACTT
GGAAGTTGCACTACAGATGGACCATGGCCCTAATGGAGGAGTTTTTCCTGCAGGGAGACAAAGAAGCTGA
ATTAGGGCTTCCATTTTCTCCACTTTGTGATCGGAAGTCAACAATGGTTGCCCAGTCGCAAATAGGTTTC
ATTGATTTCATAGTGGAGCCAACGTTTTCTCTCCTGACGGACTCAACAGAGAAAATTGTCATTCCTCTTA
TAGAGGAAGCTTCAAAGTCACAGTCTTCAAACTACGGGGCAAGCAGCTCGTCCACCATGATTGGGTTCCA
TGTTGCTGACTCTCTGAGGCGGTCAAATACAAAAGGCTCCGTGTGTGATGGGAGCTATGCCCCAGACTAC
TCGCTCTCAGCTGTGGATCTGAAGAGTTTCAAAAACAACCTGGTGGACATCATTCAGCAGAACAAAGAGA
GGTGGAAAGAGTTGGCTGCCCAAGGTGAACTTGATCTTCATAAGAACTCAGAAGAGTTAGGAAATACTGA
AGAAAAGCATGCTGACACACGTCCATAG

Translation (545 aa):
MGSTDTDIEELENATYKYLIGEQTEKMWQRLKGILRCLVKQLEKGDVNVVDLKKNIEYAASVLEAVYIDE
TRRLLDTEDELSDIQTDSVPSEVRDWLASTFTRKMGMMKKKPEEKPKFRSIVHAVQAGIFVERMYRKNYH
MVGLTYPAAVIVTLKEVDKWSFDVFALNEASGEHSLKFMIYELFTRYDLINRFKIPVSCLIAFAEALEVG
YSKHKNPYHNLVHAADVTQTVHYIMLHTGIMHWLTELEILAMVFAAAIHDYEHTGTTNNFHIQTRSDVAI
LYNDRSVLENHHVSAAYRLMQEEEMNILVNLSKDDWRDLRNLVIEMVLATDMSGHFQQIKNIRNSLQQPE
GIDRAKTMSLILHAADISHPAKTWKLHYRWTMALMEEFFLQGDKEAELGLPFSPLCDRKSTMVAQSQIGF
IDFIVEPTFSLLTDSTEKIVIPLIEEASKSQSSNYGASSSSTMIGFHVADSLRRSNTKGSVCDGSYAPDY
SLSAVDLKSFKNNLVDIIQQNKERWKELAAQGELDLHKNSEELGNTEEKHADTRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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