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Report for CCDS41630.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41630.1 Public Homo sapiens 11 CCDC73 24 110 108 CCDS HistoryNCBI Gene:493860Re-query CCDS DB by CCDS ID:41630.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41630.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335185.10 ENSP00000335325.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335185.10Link to Ensembl Protein Viewer:ENSP00000335325.5Re-query CCDS DB by Nucleotide ID:ENST00000335185Re-query CCDS DB by Protein ID:ENSP00000335325
Original member Current member NCBI NM_001008391.4 NP_001008392.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008391.4Link to Protein Sequence:NP_001008392.2Re-query CCDS DB by Nucleotide ID:NM_001008391Re-query CCDS DB by Protein ID:NP_001008392Link to BLAST:NP_001008392.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008392.2 1079 Q6ZRK6-1 1079 100% 0 0

Chromosomal Locations for CCDS 41630.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 32602811 32603020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32611132 32611265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32613422 32614942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32615940 32616129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32635696 32635830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32641972 32642082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32653123 32653227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32653978 32654037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32654844 32654972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32675565 32675644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32675886 32676021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32683536 32683574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32699251 32699325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32700791 32700826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32702873 32702944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32718076 32718147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32760109 32760243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3240 nt):
ATGGAAAGCAACTTCAATACTGAGTCATCATCTACTTTTACTCTTCAAAGTTCTTCAGAGACATTGTTTT
CTATTCAGCTATTAGATTTCAAAACAAGTTTACTGGAGGCATTAGAAGAATTGCGTATGAGAAGGGAAGC
AGAAATTCATTATGAAGAGCAGATTGGTAAAATTATTGTGGAGACACAGGAACTTAAATGGCAAAAGGAA
ACTCTTCAGAATCAAAAGGAAACATTGGCAGAGCAACACAAGGAAGCAATGGCAGTTTTTAAAAAGCAGT
TGCAGATGAAGATGTGTGCCCTGGAAGAAGAAAAGGGAAAATATCAACTTGCTACAGAAATAAAGGAAAA
AGAAATAGAAGGATTGAAGGAAACATTAAAAGCACTACAGGTTTCTAAATACTCTTTACAGAAGAAAGTG
AGTGAAATGGAACAAAAGGTCCAGTTACATCTTCTGGCTAAAGAAGACTATCATAAGCAACTGAGTGAAA
TTGAGAAATATTATGCCACAATAACAGGTCAATTTGGATTGGTAAAAGAGAATCATGAAAAGTTAGAACA
AAATGTACGGGAAGCAATACAATCAAACAAAAGACTTTCAGCTTTAAATAAAAAACAAGAAGCTGAAATA
TGCAGTTTAAAGAAGGAACTAAAAAAAGCAGCCTCAGACTTGATAAAGTCCAAAGTCACATGTCAATATA
AGATGGGAGAAGAAAACATCAATCTAACAATTAAAGAACAAAAATTTCAAGAACTTCAAGAAAGACTCAA
CATGGAATTGGAATTAAATGAGAAGATTAATGAAGAGATTACCCATATTCAAGAAGAAAAACAGGATATC
ATCATTTCTTTCCAACATATGCAGCAGTTACTTCGGCAACAAATTCAAGCTAATACTGAAATGGAGGCAG
AATTGAAGGTGCTAAAAGAAAATAATCAGACCCTTGAAAGAGATAATGAGCTGCAAAGGGAGAAGGTAAA
AGAAAATGAAGAAAAGTTTCTTAATCTTCAAAATGAGCATGAAAAAGCACTAGGAACTTGGAAAAGACAT
GCTGAAGAACTTAATGGAGAAATTAATAAGATTAAAAATGAATTATCATCCCTTAAAGAAACTCATATTA
AGTTACAAGAACATTATAACAAATTATGCAATCAAAAAACATTTGAGGAAGACAAAAAGTTTCAGAATGT
TCCAGAAGTAAATAATGAAAACAGTGAAATGTCAACTGAAAAATCAGAAAACACCATTATACAGAAATAT
AATACTGAGCAAGAAATAAGGGAAGAAAATATGGAGAATTTTTGTTCAGATACTGAATACAGAGAAAAAG
AAGAAAAAAAAGAAGGCTCATTTATAGAGGAAATAATTATAGATGATTTACAGCTTTTTGAAAAAAGCTT
CAAGAATGAAATTGATACTGTTGTTTCTCAGGATGAAAATCAAAGTGAAATCTCCTTAAGCAAAACCCTC
TCCTTAGATAAAGAAGTAATTAGTCAAGGACAAACCTCGAATGTTACGGACAACAGAAAATCAGTTACTA
CAGAAATAAAAGACAAGATATGCTTGGAAAAAGACAATGGATGTACAGAATTTAAATCACCAAATAATCA
TTTTGTAGTGTTAGATACAGCAATAGAAACAGAAAAAATACATCTAGAAAGAACCAGAGGATTAGATGTT
CACCATACAGATGTAAATCTGGAGGTTGAAAATAACAAAACATCATTTAACAGTATTTTAAATGAGACAG
CACACAATACATATCACAATAATAATAAAGATGTTTCTGAAAATGAGCCATTCAAACAATTCAGATTGCT
TCCAGGGACTCGAGAACATGCTCTAGAGAAGGAAATTACAAATAGTGACCAAACCAAAGCAGATTTGGAC
TCGTCTCTAGATATAAAAAAAAATCCTGTTCCATGTCAGAAATATAGTTTACGGAATTCAAGTAATGTTA
TGTTAGATGATAAACAATGTAAAATAAAACAAATACAACTGTTAACTAAAAAAAGTGAGTGCAGCATATT
ACTTTCTAAACAAACTTCAGATTTTCTGCAAGTCTGTAATGATACTTTAGAGAAATCTGAACTAACTGTT
CCCTGTGATATAGTAATCGACCACCATGTTTCATATGCTGCTTTTAGTGCTAATTCAAAACTACTTCTGA
AGAACTCAGATAAAAATGTCCATAGTATGTCTATGTTGGTGAAACCTAACTCAAGCCCTGGGGGAAAAAC
TATGTGTAAAAATATGAGTGATATGCAAAACAGTCAATTTAATAACTGTTTGGGATACTTAGAAAACACT
AATGTGAACATTTCCCATCTTCATCTTAACAATGAGAATAGTCATGCTTCACAAGCCAAAGATGTGAAAA
CTGCTGTTCACATGAAAACTTGCACAGAAACAGAGTTTTCCAATAAAAAGAATCAGATTGATGAGAATCA
GGTAACTGAAGCCACAAAAAATGACCTCTTCCTTTTTGTGAGCATTAATGAAAGACAGCATACATTGTTA
AATAATACAGAGAAAACAGAATCATTAAATGACATTGTTTCAGGAAAAATGTTCAGTGAAGGACAGCTGG
AGGAATCACATTCATTTCACATAGAGCCATCTGGAGATTTAGTAAACAGAAGCGGAAGGTCAACCTTTGA
TCTTTCAACTTCAGATAAAAAAACTGAGAAAACTCCAGTATACATGAATTTTTCAGACCCCGGTCCTTGG
TCAAAAGTAAATCACATTGAAAGTCAAACAGCGAGCAGTTCGACCCCTTGCATTTCTTTGTTGCTGAAGG
AGAGACCACTAGATCCATCAGAAAACAAAAAGATCATTTCAATGGCTCTTTGTAAAAATATTGGTGTGGA
TGATGTTGGAAAGGATATTGGACCAGATACTACCAGCATTAACAGAGTTGCTGACACTTTGAATAACTGG
AGTATCCATCCAGATCCCAAGGGAGAACCCAGTGAAGAGAAGAATGCAATGGCAAAGACTTTTTATGATT
CCTCTTTTCCCACAGAACATGTGAAAACAAAGCCTCTGATATCAACTCCACTACAAAGCCATTTGCAGGC
AATCAAGACGACTAAAAATACTTCTGGTGATGATGACTGGCAGAGCCTCATTACGAATCAACTAAATAAA
AGTGAAAATTTACTAAGTTTAGAAAATGACAACCAGCCAAAGAAAAGAAAAGCAGAAGAGACGTTGGAAA
AAAACAACAGATTAAAATAA

Translation (1079 aa):
MESNFNTESSSTFTLQSSSETLFSIQLLDFKTSLLEALEELRMRREAEIHYEEQIGKIIVETQELKWQKE
TLQNQKETLAEQHKEAMAVFKKQLQMKMCALEEEKGKYQLATEIKEKEIEGLKETLKALQVSKYSLQKKV
SEMEQKVQLHLLAKEDYHKQLSEIEKYYATITGQFGLVKENHEKLEQNVREAIQSNKRLSALNKKQEAEI
CSLKKELKKAASDLIKSKVTCQYKMGEENINLTIKEQKFQELQERLNMELELNEKINEEITHIQEEKQDI
IISFQHMQQLLRQQIQANTEMEAELKVLKENNQTLERDNELQREKVKENEEKFLNLQNEHEKALGTWKRH
AEELNGEINKIKNELSSLKETHIKLQEHYNKLCNQKTFEEDKKFQNVPEVNNENSEMSTEKSENTIIQKY
NTEQEIREENMENFCSDTEYREKEEKKEGSFIEEIIIDDLQLFEKSFKNEIDTVVSQDENQSEISLSKTL
SLDKEVISQGQTSNVTDNRKSVTTEIKDKICLEKDNGCTEFKSPNNHFVVLDTAIETEKIHLERTRGLDV
HHTDVNLEVENNKTSFNSILNETAHNTYHNNNKDVSENEPFKQFRLLPGTREHALEKEITNSDQTKADLD
SSLDIKKNPVPCQKYSLRNSSNVMLDDKQCKIKQIQLLTKKSECSILLSKQTSDFLQVCNDTLEKSELTV
PCDIVIDHHVSYAAFSANSKLLLKNSDKNVHSMSMLVKPNSSPGGKTMCKNMSDMQNSQFNNCLGYLENT
NVNISHLHLNNENSHASQAKDVKTAVHMKTCTETEFSNKKNQIDENQVTEATKNDLFLFVSINERQHTLL
NNTEKTESLNDIVSGKMFSEGQLEESHSFHIEPSGDLVNRSGRSTFDLSTSDKKTEKTPVYMNFSDPGPW
SKVNHIESQTASSSTPCISLLLKERPLDPSENKKIISMALCKNIGVDDVGKDIGPDTTSINRVADTLNNW
SIHPDPKGEPSEEKNAMAKTFYDSSFPTEHVKTKPLISTPLQSHLQAIKTTKNTSGDDDWQSLITNQLNK
SENLLSLENDNQPKKRKAEETLEKNNRLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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