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Report for CCDS3889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3889.1 Public Homo sapiens 5 CDH18 24 110 108 CCDS HistoryNCBI Gene:1016Re-query CCDS DB by CCDS ID:3889.1Re-query CCDS DB by GeneID:1016See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3889.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274170.8 ENSP00000274170.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000274170.8Link to Ensembl Protein Viewer:ENSP00000274170.3Re-query CCDS DB by Nucleotide ID:ENST00000274170Re-query CCDS DB by Protein ID:ENSP00000274170
Original member Current member EBI ENST00000382275.6 ENSP00000371710.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382275.6Link to Ensembl Protein Viewer:ENSP00000371710.1Re-query CCDS DB by Nucleotide ID:ENST00000382275Re-query CCDS DB by Protein ID:ENSP00000371710
Original member Current member EBI ENST00000507958.5 ENSP00000425093.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507958.5Link to Ensembl Protein Viewer:ENSP00000425093.1Re-query CCDS DB by Nucleotide ID:ENST00000507958Re-query CCDS DB by Protein ID:ENSP00000425093
Original member Current member NCBI NM_001291956.3 NP_001278885.1 Accepted alive Link to Nucleotide Sequence:NM_001291956.3Link to Protein Sequence:NP_001278885.1Re-query CCDS DB by Nucleotide ID:NM_001291956Re-query CCDS DB by Protein ID:NP_001278885Link to BLAST:NP_001278885.1
Original member Current member NCBI NM_001349556.2 NP_001336485.1 Accepted alive Link to Nucleotide Sequence:NM_001349556.2Link to Protein Sequence:NP_001336485.1Re-query CCDS DB by Nucleotide ID:NM_001349556Re-query CCDS DB by Protein ID:NP_001336485Link to BLAST:NP_001336485.1
Original member Current member NCBI NM_001349558.2 NP_001336487.1 Accepted alive Link to Nucleotide Sequence:NM_001349558.2Link to Protein Sequence:NP_001336487.1Re-query CCDS DB by Nucleotide ID:NM_001349558Re-query CCDS DB by Protein ID:NP_001336487Link to BLAST:NP_001336487.1
Original member Current member NCBI NM_001349559.2 NP_001336488.1 Accepted alive Link to Nucleotide Sequence:NM_001349559.2Link to Protein Sequence:NP_001336488.1Re-query CCDS DB by Nucleotide ID:NM_001349559Re-query CCDS DB by Protein ID:NP_001336488Link to BLAST:NP_001336488.1
Original member Current member NCBI NM_004934.5 NP_004925.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004934.5Link to Protein Sequence:NP_004925.1Re-query CCDS DB by Nucleotide ID:NM_004934Re-query CCDS DB by Protein ID:NP_004925Link to BLAST:NP_004925.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278885.1 790 Q13634-1 790 100% 0 0
NP_001336485.1 790 Q13634-1 790 100% 0 0
NP_001336487.1 790 Q13634-1 790 100% 0 0
NP_001336488.1 790 Q13634-1 790 100% 0 0
NP_004925.1 790 Q13634-1 790 100% 0 0

Chromosomal Locations for CCDS 3889.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 19473226 19473716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19483301 19483552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19502992 19503109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19520657 19520778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19543869 19544005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19571579 19571832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19591057 19591244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19612434 19612601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19721347 19721466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19746942 19747236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 19838759 19838986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGAAAATTACTAGCACATCTTGCATCTGTCCAGTCCTAGTGTGTCTCTGTTTTGTGCAGAGGTGTTATG
GAACTGCTCACCACAGCTCCATCAAGGTGATGAGAAACCAAACCAAACACATTGAAGGTGAAACCGAAGT
CCATCATCGTCCCAAAAGGGGATGGGTATGGAATCAGTTCTTTGTTTTAGAAGAACATATGGGACCAGAT
CCTCAGTATGTTGGAAAGCTGCACTCCAATTCTGACAAAGGTGATGGATCTGTCAAGTACATCCTTACTG
GAGAGGGTGCTGGGACTATATTTATCATTGACGATACCACGGGTGATATCCACTCAACAAAAAGCCTAGA
CAGAGAGCAGAAGACCCACTATGTGCTTCATGCTCAAGCTATTGATAGACGTACAAACAAACCTCTTGAG
CCTGAATCCGAGTTCATCATCAAAGTGCAAGACATCAATGACAACGCTCCAAAATTCACAGATGGACCAT
ACATTGTTACTGTGCCTGAAATGTCAGATATGGGTACCTCTGTTCTACAGGTGACAGCTACTGATGCAGA
TGACCCTACCTATGGAAACAGCGCTCGGGTGGTTTACAGCATTCTCCAAGGACAACCCTACTTCTCCGTC
GACCCTAAAACAGGAGTTATTAGAACGGCCTTACATAACATGGACAGAGAAGCCAGAGAACATTACTCCG
TAGTCATTCAAGCCAAAGACATGGCTGGGCAAGTTGGAGGGCTTTCAGGATCTACAACAGTCAACATCAC
CTTAACCGATGTCAATGACAACCCACCACGCTTTCCTCAAAAACACTATCAGCTATATGTTCCTGAGTCA
GCTCAAGTTGGTTCAGCTGTTGGGAAAATCAAGGCAAATGATGCTGACACTGGCTCAAATGCTGACATGA
CCTACTCCATCATAAATGGTGATGGCATGGGAATATTCTCAATCTCCACTGACAAAGAGACCAGAGAAGG
AATCCTTTCTTTAAAGAAGCCACTGAACTATGAGAAAAAGAAGTCATATACCCTCAACATAGAAGGAGCA
AATACACATCTTGATTTTCGCTTTTCTCACTTGGGTCCTTTTAAAGATGCTACTATGCTGAAGATCATTG
TTGGGGATGTAGATGAACCACCACTATTTTCCATGCCTTCCTACCTCATGGAAGTCTACGAAAATGCCAA
GATTGGGACCGTCGTTGGTACAGTTTTGGCACAAGATCCTGACAGTACTAACAGCTTAGTAAGATACTTC
ATCAACTACAATGTTGAAGACGACAGATTTTTCAACATTGATGCCAATACTGGGACCATTAGGACTACAA
AGGTTCTCGACAGAGAAGAAACTCCATGGTACAACATCACAGTCACTGCTTCAGAAATTGATAATCCTGA
TTTGCTGAGCCATGTCACAGTGGGTATTAGAGTTCTGGATGTCAATGACAATCCACCCGAACTTGCCAGG
GAATATGATATTATTGTATGTGAAAATTCTAAGCCTGGCCAGGTTATTCATACCATCAGTGCCACTGATA
AAGATGATTTTGCCAATGGACCAAGGTTTAACTTCTTTCTTGATGAACGCCTGCCTGTAAATCCAAACTT
CACTCTGAAGGACAATGAAGATAACACAGCCAGCATTCTGACAAGGCGGAGGAGATTTAGTCGAACTGTT
CAGGATGTGTATTATCTGCCCATTATGATCTCTGATGGTGGAATCCCCTCTCTCAGCAGCAGCAGCACCC
TCACCATCAGGGTTTGTGCATGCGAGAGAGATGGGCGTGTGCGGACCTGCCATGCAGAAGCCTTCCTGTC
CTCGGCTGGTTTGAGTACAGGAGCCTTAATCGCTATTCTTCTCTGTGTTCTCATTCTCCTGGCAATTGTG
GTACTTTTTATCACCCTGAGGCGCAGCAAAAAAGAGCCCTTGATCATTTCAGAAGAGGATGTACGGGAGA
ACGTGGTCACCTATGATGATGAAGGAGGCGGAGAGGAAGACACAGAGGCCTTTGACATCACAGCCTTGAG
GAATCCTTCTGCTGCTGAGGAGCTCAAGTACCGGAGGGATATCAGACCTGAAGTGAAGCTCACTCCCAGA
CACCAGACATCATCCACCCTGGAAAGCATAGATGTTCAGGAATTTATTAAGCAAAGACTGGCAGAAGCAG
ACCTAGACCCTAGCGTTCCCCCTTATGACTCTCTTCAGACTTATGCCTATGAGGGTCAGAGATCAGAAGC
TGGGTCTATCAGCTCGCTGGATTCAGCAACGACACAATCAGACCAGGATTATCACTACCTTGGAGACTGG
GGACCCGAGTTTAAAAAGTTAGCTGAACTCTATGGAGAAATAGAATCTGAAAGAACAACTTAG

Translation (790 aa):
MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKVMRNQTKHIEGETEVHHRPKRGWVWNQFFVLEEHMGPD
PQYVGKLHSNSDKGDGSVKYILTGEGAGTIFIIDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLE
PESEFIIKVQDINDNAPKFTDGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSV
DPKTGVIRTALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLYVPES
AQVGSAVGKIKANDADTGSNADMTYSIINGDGMGIFSISTDKETREGILSLKKPLNYEKKKSYTLNIEGA
NTHLDFRFSHLGPFKDATMLKIIVGDVDEPPLFSMPSYLMEVYENAKIGTVVGTVLAQDPDSTNSLVRYF
INYNVEDDRFFNIDANTGTIRTTKVLDREETPWYNITVTASEIDNPDLLSHVTVGIRVLDVNDNPPELAR
EYDIIVCENSKPGQVIHTISATDKDDFANGPRFNFFLDERLPVNPNFTLKDNEDNTASILTRRRRFSRTV
QDVYYLPIMISDGGIPSLSSSSTLTIRVCACERDGRVRTCHAEAFLSSAGLSTGALIAILLCVLILLAIV
VLFITLRRSKKEPLIISEEDVRENVVTYDDEGGGEEDTEAFDITALRNPSAAEELKYRRDIRPEVKLTPR
HQTSSTLESIDVQEFIKQRLAEADLDPSVPPYDSLQTYAYEGQRSEAGSISSLDSATTQSDQDYHYLGDW
GPEFKKLAELYGEIESERTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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