NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS30969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30969.1 Public Homo sapiens 1 TNNT2 24 110 108 CCDS HistoryNCBI Gene:7139Re-query CCDS DB by CCDS ID:30969.1Re-query CCDS DB by GeneID:7139See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30969.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367318.10 ENSP00000356287.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367318.10Link to Ensembl Protein Viewer:ENSP00000356287.5Re-query CCDS DB by Nucleotide ID:ENST00000367318Re-query CCDS DB by Protein ID:ENSP00000356287
Original member Current member EBI ENST00000509001.5 ENSP00000422031.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509001.5Link to Ensembl Protein Viewer:ENSP00000422031.1Re-query CCDS DB by Nucleotide ID:ENST00000509001Re-query CCDS DB by Protein ID:ENSP00000422031
Original member Current member EBI ENST00000660295.1 ENSP00000499418.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000660295.1Link to Ensembl Protein Viewer:ENSP00000499418.1Re-query CCDS DB by Nucleotide ID:ENST00000660295Re-query CCDS DB by Protein ID:ENSP00000499418
Original member Current member NCBI NM_001001430.3 NP_001001430.1 Accepted alive Link to Nucleotide Sequence:NM_001001430.3Link to Protein Sequence:NP_001001430.1Re-query CCDS DB by Nucleotide ID:NM_001001430Re-query CCDS DB by Protein ID:NP_001001430Link to BLAST:NP_001001430.1
Original member Current member NCBI NM_001276347.2 NP_001263276.1 Accepted alive Link to Nucleotide Sequence:NM_001276347.2Link to Protein Sequence:NP_001263276.1Re-query CCDS DB by Nucleotide ID:NM_001276347Re-query CCDS DB by Protein ID:NP_001263276Link to BLAST:NP_001263276.1
Current member NCBI NM_001406724.1 NP_001393653.1 Accepted alive Link to Nucleotide Sequence:NM_001406724.1Link to Protein Sequence:NP_001393653.1Re-query CCDS DB by Nucleotide ID:NM_001406724Re-query CCDS DB by Protein ID:NP_001393653Link to BLAST:NP_001393653.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001430.1 288 P45379-6 288 100% 0 0
NP_001263276.1 288 P45379-6 288 100% 0 0
NP_001393653.1 288 P45379-6 288 100% 0 0

Chromosomal Locations for CCDS 30969.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 201359210 201359255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201359623 201359663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201361279 201361369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201361913 201362022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201362386 201362394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201363296 201363406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201364298 201364375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201365191 201365307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201365610 201365670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201366838 201366871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201367771 201367806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201368162 201368227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201372027 201372041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201372145 201372155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201373214 201373254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGTCTGACATAGAAGAGGTGGTGGAAGAGTACGAGGAGGAGGAGCAGGAAGAAGCAGCTGTTGAAGAGC
AGGAGGAGGCAGCGGAAGAGGATGCTGAAGCAGAGGCTGAGACCGAGGAGACCAGGGCAGAAGAAGATGA
AGAAGAAGAGGAAGCAAAGGAGGCTGAAGATGGCCCAATGGAGGAGTCCAAACCAAAGCCCAGGTCGTTC
ATGCCCAACTTGGTGCCTCCCAAGATCCCCGATGGAGAGAGAGTGGACTTTGATGACATCCACCGGAAGC
GCATGGAGAAGGACCTGAATGAGTTGCAGGCGCTGATCGAGGCTCACTTTGAGAACAGGAAGAAAGAGGA
GGAGGAGCTCGTTTCTCTCAAAGACAGGATCGAGAGACGTCGGGCAGAGCGGGCCGAGCAGCAGCGCATC
CGGAATGAGCGGGAGAAGGAGCGGCAGAACCGCCTGGCTGAAGAGAGGGCTCGACGAGAGGAGGAGGAGA
ACAGGAGGAAGGCTGAGGATGAGGCCCGGAAGAAGAAGGCTTTGTCCAACATGATGCATTTTGGGGGTTA
CATCCAGAAGCAGGCCCAGACAGAGCGGAAAAGTGGGAAGAGGCAGACTGAGCGGGAAAAGAAGAAGAAG
ATTCTGGCTGAGAGGAGGAAGGTGCTGGCCATTGACCACCTGAATGAAGATCAGCTGAGGGAGAAGGCCA
AGGAGCTGTGGCAGAGCATCTATAACTTGGAGGCAGAGAAGTTCGACCTGCAGGAGAAGTTCAAGCAGCA
GAAATATGAGATCAATGTTCTCCGAAACAGGATCAACGATAACCAGAAAGTCTCCAAGACCCGCGGGAAG
GCTAAAGTCACCGGGCGCTGGAAATAG

Translation (288 aa):
MSDIEEVVEEYEEEEQEEAAVEEQEEAAEEDAEAEAETEETRAEEDEEEEEAKEAEDGPMEESKPKPRSF
MPNLVPPKIPDGERVDFDDIHRKRMEKDLNELQALIEAHFENRKKEEEELVSLKDRIERRRAERAEQQRI
RNEREKERQNRLAEERARREEEENRRKAEDEARKKKALSNMMHFGGYIQKQAQTERKSGKRQTEREKKKK
ILAERRKVLAIDHLNEDQLREKAKELWQSIYNLEAEKFDLQEKFKQQKYEINVLRNRINDNQKVSKTRGK
AKVTGRWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH