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Report for CCDS20517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20517.1 Public Mus musculus 6 Pex5 23 108 98 CCDS HistoryNCBI Gene:19305Re-query CCDS DB by CCDS ID:20517.1Re-query CCDS DB by GeneID:19305See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035861.5 ENSMUSP00000049132.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035861.5Link to Ensembl Protein Viewer:ENSMUSP00000049132.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035861Re-query CCDS DB by Protein ID:ENSMUSP00000049132
Original member Current member EBI ENSMUST00000112532.7 ENSMUSP00000108151.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112532.7Link to Ensembl Protein Viewer:ENSMUSP00000108151.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112532Re-query CCDS DB by Protein ID:ENSMUSP00000108151
Original member NCBI NM_001277805.1 NP_001264734.1 Updated not alive Link to Nucleotide Sequence:NM_001277805.1Link to Protein Sequence:NP_001264734.1Re-query CCDS DB by Nucleotide ID:NM_001277805Re-query CCDS DB by Protein ID:NP_001264734
Current member NCBI NM_001277805.2 NP_001264734.1 Accepted alive Link to Nucleotide Sequence:NM_001277805.2Link to Protein Sequence:NP_001264734.1Re-query CCDS DB by Nucleotide ID:NM_001277805Re-query CCDS DB by Protein ID:NP_001264734Link to BLAST:NP_001264734.1
Original member NCBI NM_008995.2 NP_033021.2 Updated not alive Link to Nucleotide Sequence:NM_008995.2Link to Protein Sequence:NP_033021.2Re-query CCDS DB by Nucleotide ID:NM_008995Re-query CCDS DB by Protein ID:NP_033021
Current member NCBI NM_008995.3 NP_033021.2 Accepted alive Link to Nucleotide Sequence:NM_008995.3Link to Protein Sequence:NP_033021.2Re-query CCDS DB by Nucleotide ID:NM_008995Re-query CCDS DB by Protein ID:NP_033021Link to BLAST:NP_033021.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264734.1 639 O09012-1 639 100% 0 0
NP_033021.2 639 O09012-1 639 100% 0 0

Chromosomal Locations for CCDS 20517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124397969 124398170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124398344 124398501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124398781 124398946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124399248 124399454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124399859 124399929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124400088 124400231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124403116 124403235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124403812 124403907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124404133 124404243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124404630 124404720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124405167 124405272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124413269 124413400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124413569 124413701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124414007 124414042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124414287 124414433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGGCAATGCGGGAGCTGGTGGAGGGCGAATGTGGGGGTGCCAACCCGCTGATGAAGCTGGCCACCCATT
TCACCCAGGACAAGGCCCTTCGGCAGGAGGGACTGAGGCCTGGCCCCTGGCCTCCGGGAGCCTCAGCAGC
AGAGACCGTTTCCAAGCCTTTGGGAGTAGGAACTGAAGACGAGTTGGTGTCAGAATTCCTGCAGGACCAG
AATGCAACTCTTGTATCCCGAGCCCCTCAGACCTTCAAGATGGATGACCTCCTGGCAGAGATGCAGGAGA
TTGAACAGTCAAACTTTCGCCAGGCTCCTCAGAGAGCCCCTGGTGTGGCAGATTTGGCCTTGTCTGAGAA
TTGGGCCCAGGAGTTTCTTGCAGCTGGAGATGCTGTGGATGTAGCTCAAGATTATAATGAGACCGACTGG
TCCCAAGAATTCATCGCCGAAGTTACAGACCCACTGTCCGTGTCCCCTGCCCGATGGGCTGAGGAGTATC
TGGAGCAGTCTGAGGAGAAGCTGTGGTTGGGAGACCAGGAAGGATCCTCTACCGCTGATCGATGGTACGA
TGAATATCATCCTGAGGAGGACCTGCAGCACACAGCCAGTGACTTTGTGTCCAAGGTGGACGACCCCAAA
TTGGCTAACTCTGAGTTCCTGAAATTCGTGCGGCAGATTGGCGAGGGGCAGGTGTCCCTGGAGTCGGCTG
CAGGGTCGGGCGGAGCTCAGGCAGAACAGTGGGCAGCAGAGTTTATACAGCAGCAGGGCACGTCAGAGGC
CTGGGTTGATCAGTTTACAAGACCAGGAAACAAAATAGCTGCCCTTCAGGTGGAATTTGAACGAGCCAAG
TCAGCTATAGAGTCTGATGTCGATTTCTGGGACAAGTTACAGGCAGAGTTGGAGGAGATGGCCAAGCGGG
ATGCCGAGGCGCACCCCTGGCTTTCTGACTATGATGACCTCACATCCGCTTCCTATGACAAGGGTTACCA
GTTTGAGGAGGAGAATCCCTTGCGTGACCACCCTCAGCCTTTTGAAGAAGGGCTGCATCGACTGGAGGAG
GGAGACCTGCCCAATGCTGTGTTGCTCTTCGAGGCTGCTGTGCAGCAGGATCCTAAGCACATGGAAGCTT
GGCAGTACCTGGGCACCACCCAGGCCGAGAATGAGCAAGAGCTCTTGGCTATCAGTGCCCTGCGGAGGTG
TCTGGAACTAAAGCCAGATAACCGGACAGCACTGATGGCGCTGGCTGTGAGCTTTACCAATGAGTCCCTG
CAGCGCCAGGCCTGTGAGACGTTGAGGGACTGGCTGCGCTACTCACCGGCCTACGCTCATCTGGTGGCTC
CTGGGGAAGAAGGGGCGACCGGGGCAGGCCCCAGCAAGCGCATCTTGGGATCTCTGTTGTCTGACTCCCT
GTTTCTTGAAGTAAAAGATCTCTTCCTGGCGGCTGTGCGTCTGGACCCTACATCCATTGACCCTGATGTG
CAGTGTGGCCTGGGAGTCCTCTTCAACCTGAGCGGGGAGTACGACAAGGCTGTGGACTGTTTCACAGCTG
CCCTCAGTGTTCGCCCCAATGACTATTTGATGTGGAACAAGCTTGGGGCCACCCTGGCCAATGGGAACCA
GAGTGAAGAAGCAGTGGCTGCATACCGCCGAGCCCTTGAACTACAGCCTGGGTATATTCGGTCCCGGTAT
AACCTAGGCATCAGCTGCATCAACCTGGGAGCTCACCGTGAGGCTGTGGAGCACTTTCTGGAGGCTCTGA
ACATGCAGAGGAAGAGCCGGGGCCCTCGGGGTGAGGGGGGCGCCATGTCTGAGAACATCTGGAGTACCCT
GCGCTTGGCGTTATCCATGTTAGGCCAGAGCGATGCCTATGGGGCAGCCGATGCTCGGGATCTGTCTGCC
CTCCTAGCTATGTTTGGCCTGCCCCAGTGA

Translation (639 aa):
MAMRELVEGECGGANPLMKLATHFTQDKALRQEGLRPGPWPPGASAAETVSKPLGVGTEDELVSEFLQDQ
NATLVSRAPQTFKMDDLLAEMQEIEQSNFRQAPQRAPGVADLALSENWAQEFLAAGDAVDVAQDYNETDW
SQEFIAEVTDPLSVSPARWAEEYLEQSEEKLWLGDQEGSSTADRWYDEYHPEEDLQHTASDFVSKVDDPK
LANSEFLKFVRQIGEGQVSLESAAGSGGAQAEQWAAEFIQQQGTSEAWVDQFTRPGNKIAALQVEFERAK
SAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSASYDKGYQFEEENPLRDHPQPFEEGLHRLEE
GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNRTALMALAVSFTNESL
QRQACETLRDWLRYSPAYAHLVAPGEEGATGAGPSKRILGSLLSDSLFLEVKDLFLAAVRLDPTSIDPDV
QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLMWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY
NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSA
LLAMFGLPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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