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Report for CCDS20068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20068.1 Public Mus musculus 6 Tas2r143 23 108 98 CCDS HistoryNCBI Gene:387514Re-query CCDS DB by CCDS ID:20068.1Re-query CCDS DB by GeneID:387514See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20068.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057398.3 ENSMUSP00000057910.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057398.3Link to Ensembl Protein Viewer:ENSMUSP00000057910.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000057398Re-query CCDS DB by Protein ID:ENSMUSP00000057910
Original member Current member NCBI NM_001001452.1 NP_001001452.1 Accepted alive Link to Nucleotide Sequence:NM_001001452.1Link to Protein Sequence:NP_001001452.1Re-query CCDS DB by Nucleotide ID:NM_001001452Re-query CCDS DB by Protein ID:NP_001001452Link to BLAST:NP_001001452.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001452.1 293 Q7TQB9 293 100% 0 0

Chromosomal Locations for CCDS 20068.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42400238 42401119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGCCCTCCACACCCACATTGATCTTCATTATCATCTTTTACCTGGTGTCATTGGCCTCTATGTTGCAGA
ATGGCTTCATGATGATTGTGCTGGGCAGAGAGTGGATGAGGAACCGGACACTACCGGCAGCTGACATGAT
TGTGGCCTCTCTTGCTTCCTCCCGGTTCTGCTTGCATGGGATCGCCATCCTGGCCAACCTCTTGGCCTCC
TTTGATTTTTGTTACCAAGCGAACCTTATTGGCATCCTCTGGGATTTCACTAACACTCTCATTTTTTGGC
TTACTGCCTGGCTTGCCATCTTCTACTGTGTGAAGATCTCCTCTTTCTCCCACCCTGTCCTCTTTTGGCT
CAAGTGGAGGATTTCCCAGTTAGTTCCCAGGCTGCTGGTTGTATCTCTCATCATAGGTGGCCTGTCAGCT
GTCATTTCAGCCACCGGGAACTTCATGGCCAATCAGATGACCATCTCCCAGGGTTTCCATGGAAACTGCA
CTTTTGGTCACATGTCACTGGACTTCTATCGGTACTATTACCTGTATCACTCAGTGCTCATGTGGTTCAC
TCCTTTCTTCCTGTTTCTAGTGTCCGTTATCGTGCTCATGTTCTCACTGTACCAGCATGTGGAGAAGATG
AGGGGCCACAGGCCTGGGCCTTGGGATCTCCATACTCAGGCACATACCATGGCTCTGAAATCCCTTACCT
TCTTCTTCATCTTTTATATCTTTTTTTTCTTGGCCCTGGTAATTTCTAGTACAAAAAGGAAAAGCATGCA
GAGTTACTATTGGGCCAGAGAGGCTATCATCTACACAGGCATCTTTTTGAACTCCATCATCCTGCTGTTT
AGCAACCCCAAACTGAGAAAGGCCCTGAAGATGAGGTTTTAG

Translation (293 aa):
MPSTPTLIFIIIFYLVSLASMLQNGFMMIVLGREWMRNRTLPAADMIVASLASSRFCLHGIAILANLLAS
FDFCYQANLIGILWDFTNTLIFWLTAWLAIFYCVKISSFSHPVLFWLKWRISQLVPRLLVVSLIIGGLSA
VISATGNFMANQMTISQGFHGNCTFGHMSLDFYRYYYLYHSVLMWFTPFFLFLVSVIVLMFSLYQHVEKM
RGHRPGPWDLHTQAHTMALKSLTFFFIFYIFFFLALVISSTKRKSMQSYYWAREAIIYTGIFLNSIILLF
SNPKLRKALKMRF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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