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Report for CCDS8588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8588.1 Public Homo sapiens 12 C3AR1 24 110 108 CCDS HistoryNCBI Gene:719Re-query CCDS DB by CCDS ID:8588.1Re-query CCDS DB by GeneID:719See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8588.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307637.5 ENSP00000302079.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307637.5Link to Ensembl Protein Viewer:ENSP00000302079.4Re-query CCDS DB by Nucleotide ID:ENST00000307637Re-query CCDS DB by Protein ID:ENSP00000302079
Original member Current member NCBI NM_001326475.2 NP_001313404.1 Accepted alive Link to Nucleotide Sequence:NM_001326475.2Link to Protein Sequence:NP_001313404.1Re-query CCDS DB by Nucleotide ID:NM_001326475Re-query CCDS DB by Protein ID:NP_001313404Link to BLAST:NP_001313404.1
Original member Current member NCBI NM_001326477.2 NP_001313406.1 Accepted alive Link to Nucleotide Sequence:NM_001326477.2Link to Protein Sequence:NP_001313406.1Re-query CCDS DB by Nucleotide ID:NM_001326477Re-query CCDS DB by Protein ID:NP_001313406Link to BLAST:NP_001313406.1
Original member Current member NCBI NM_004054.4 NP_004045.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004054.4Link to Protein Sequence:NP_004045.1Re-query CCDS DB by Nucleotide ID:NM_004054Re-query CCDS DB by Protein ID:NP_004045Link to BLAST:NP_004045.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001313404.1 482 Q16581 482 100% 0 0
NP_001313406.1 482 Q16581 482 100% 0 0
NP_004045.1 482 Q16581 482 100% 0 0

Chromosomal Locations for CCDS 8588.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 8058737 8060185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGGCGTCTTTCTCTGCTGAGACCAATTCAACTGACCTACTCTCACAGCCATGGAATGAGCCCCCAGTAA
TTCTCTCCATGGTCATTCTCAGCCTTACTTTTTTACTGGGATTGCCAGGCAATGGGCTGGTGCTGTGGGT
GGCTGGCCTGAAGATGCAGCGGACAGTGAACACAATTTGGTTCCTCCACCTCACCTTGGCGGACCTCCTC
TGCTGCCTCTCCTTGCCCTTCTCGCTGGCTCACTTGGCTCTCCAGGGACAGTGGCCCTACGGCAGGTTCC
TATGCAAGCTCATCCCCTCCATCATTGTCCTCAACATGTTTGCCAGTGTCTTCCTGCTTACTGCCATTAG
CCTGGATCGCTGTCTTGTGGTATTCAAGCCAATCTGGTGTCAGAATCATCGCAATGTAGGGATGGCCTGC
TCTATCTGTGGATGTATCTGGGTGGTGGCTTTTGTGATGTGCATTCCTGTGTTCGTGTACCGGGAAATCT
TCACTACAGACAACCATAATAGATGTGGCTACAAATTTGGTCTCTCCAGCTCATTAGATTATCCAGACTT
TTATGGAGATCCACTAGAAAACAGGTCTCTTGAAAACATTGTTCAGCCGCCTGGAGAAATGAATGATAGG
TTAGATCCTTCCTCTTTCCAAACAAATGATCATCCTTGGACAGTCCCCACTGTCTTCCAACCTCAAACAT
TTCAAAGACCTTCTGCAGATTCACTCCCTAGGGGTTCTGCTAGGTTAACAAGTCAAAATCTGTATTCTAA
TGTATTTAAACCTGCTGATGTGGTCTCACCTAAAATCCCCAGTGGGTTTCCTATTGAAGATCACGAAACC
AGCCCACTGGATAACTCTGATGCTTTTCTCTCTACTCATTTAAAGCTGTTCCCTAGCGCTTCTAGCAATT
CCTTCTACGAGTCTGAGCTACCACAAGGTTTCCAGGATTATTACAATTTAGGCCAATTCACAGATGACGA
TCAAGTGCCAACACCCCTCGTGGCAATAACGATCACTAGGCTAGTGGTGGGTTTCCTGCTGCCCTCTGTT
ATCATGATAGCCTGTTACAGCTTCATTGTCTTCCGAATGCAAAGGGGCCGCTTCGCCAAGTCTCAGAGCA
AAACCTTTCGAGTGGCCGTGGTGGTGGTGGCTGTCTTTCTTGTCTGCTGGACTCCATACCACATTTTTGG
AGTCCTGTCATTGCTTACTGACCCAGAAACTCCCTTGGGGAAAACTCTGATGTCCTGGGATCATGTATGC
ATTGCTCTAGCATCTGCCAATAGTTGCTTTAATCCCTTCCTTTATGCCCTCTTGGGGAAAGATTTTAGGA
AGAAAGCAAGGCAGTCCATTCAGGGAATTCTGGAGGCAGCCTTCAGTGAGGAGCTCACACGTTCCACCCA
CTGTCCCTCAAACAATGTCATTTCAGAAAGAAATAGTACAACTGTGTGA

Translation (482 aa):
MASFSAETNSTDLLSQPWNEPPVILSMVILSLTFLLGLPGNGLVLWVAGLKMQRTVNTIWFLHLTLADLL
CCLSLPFSLAHLALQGQWPYGRFLCKLIPSIIVLNMFASVFLLTAISLDRCLVVFKPIWCQNHRNVGMAC
SICGCIWVVAFVMCIPVFVYREIFTTDNHNRCGYKFGLSSSLDYPDFYGDPLENRSLENIVQPPGEMNDR
LDPSSFQTNDHPWTVPTVFQPQTFQRPSADSLPRGSARLTSQNLYSNVFKPADVVSPKIPSGFPIEDHET
SPLDNSDAFLSTHLKLFPSASSNSFYESELPQGFQDYYNLGQFTDDDQVPTPLVAITITRLVVGFLLPSV
IMIACYSFIVFRMQRGRFAKSQSKTFRVAVVVVAVFLVCWTPYHIFGVLSLLTDPETPLGKTLMSWDHVC
IALASANSCFNPFLYALLGKDFRKKARQSIQGILEAAFSEELTRSTHCPSNNVISERNSTTV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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