NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20509.1 Public Mus musculus 6 Clec4a4 23 108 98 CCDS HistoryNCBI Gene:474145Re-query CCDS DB by CCDS ID:20509.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20509.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079379.2 ENSMUSP00000078351.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079379.2Link to Ensembl Protein Viewer:ENSMUSP00000078351.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000079379Re-query CCDS DB by Protein ID:ENSMUSP00000078351
Original member Current member NCBI NM_001005860.2 NP_001005860.1 Accepted alive Link to Nucleotide Sequence:NM_001005860.2Link to Protein Sequence:NP_001005860.1Re-query CCDS DB by Nucleotide ID:NM_001005860Re-query CCDS DB by Protein ID:NP_001005860Link to BLAST:NP_001005860.1

Chromosomal Locations for CCDS 20509.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 122990367 122990448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122991760 122991876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123004009 123004110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123012703 123012857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123013759 123013871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123023899 123024040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGCTTCAGAAATCACTTATGCAGAAGTGAGGATCACGAATGAATCCGACTCCTTGGACACCTACTCAA
AATGTCCTGCAGCTCCCAGAGAGAAACCTATCCGTGATCTAAGAAAGCCTGGTTCCCCCTCACTGCTTCT
TACATCCCTGATGCTACTTCTCCTGCTGCTGGCAATCACATTCTTAGTTGCTTTTATCATTTATTTTCAA
AAGTACTCTCAACTTCTTGAAGAAAAAGAAGCTGCAAAAAATATAATGTACAAGGAATTGAACTGCATAA
AAAATGGTTCACTCATGGAAGACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAAACCATTTGTTTCCCA
CTGCTACTTCATTTTGAATGACTCGAAGGCATCTTGGAATGAGAGTGAGGAGAAGTGCTCCCACATGGGT
GCTCATCTGGTGGTGATCCACAGCCAGGCAGAGCAGGATTTCATCACCAGCAACCTGAACACAAGTGCTG
GTTATTTTATAGGACTTTTGGATGCTGGTCAAAGACAATGGCGATGGATTGATCAGACACCATACAATAA
GAGTGCTACGTTCTGGCACAAAGGTGAGCCCAACCAAGATTGGGAACGATGTGTTATAATAAATCATAAA
ACAACTGGATGGGGCTGGAATGATATCCCTTGCAAAGATGAACACAATTCAGTTTGTCAGGTGAAGAAAA
TATACTTATGA

Translation (236 aa):
MASEITYAEVRITNESDSLDTYSKCPAAPREKPIRDLRKPGSPSLLLTSLMLLLLLLAITFLVAFIIYFQ
KYSQLLEEKEAAKNIMYKELNCIKNGSLMEDKVWSCCPKDWKPFVSHCYFILNDSKASWNESEEKCSHMG
AHLVVIHSQAEQDFITSNLNTSAGYFIGLLDAGQRQWRWIDQTPYNKSATFWHKGEPNQDWERCVIINHK
TTGWGWNDIPCKDEHNSVCQVKKIYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH