NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS59248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59248.1 Public Homo sapiens 15 POTEB2 24 110 108 CCDS HistoryNCBI Gene:100287399Re-query CCDS DB by CCDS ID:59248.1Re-query CCDS DB by GeneID:100287399See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 59248.1
The exon combination of this CCDS representation is inferred based on highly similar paralogous transcript alignments, e.g., AY465170.1 or BC101005.1.

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 59248.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000454856.4 ENSP00000456953.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000454856.4Link to Ensembl Protein Viewer:ENSP00000456953.1Re-query CCDS DB by Nucleotide ID:ENST00000454856Re-query CCDS DB by Protein ID:ENSP00000456953
Original member Current member NCBI NM_001277303.1 NP_001264232.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001277303.1Link to Protein Sequence:NP_001264232.1Re-query CCDS DB by Nucleotide ID:NM_001277303Re-query CCDS DB by Protein ID:NP_001264232Link to BLAST:NP_001264232.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264232.1 544 H3BUK9 544 100% 0 0

Chromosomal Locations for CCDS 59248.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 20835391 20835603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 20837244 20837367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 20845833 20845999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 20847045 20847089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 20848493 20848563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 20854057 20854127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 20856636 20856773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 20858111 20858217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 20861042 20861215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 20861375 20861489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 20865872 20866281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGGTGGCTGAGGTTTGTTCAATGCCCGCTGCCTCTGCTGTGAAGAAGCCATTTGATCTCAGGAGCAAGA
TGGGCAAGTGGTGCCACCACCGCTTCCCCTGCTGCAGGGGGAGCGGCACGAGCAATGTGGGCACTTCTGG
AGACCATGACGACTCCTTTATGAAGACACTCAGGAGCAAGATGGGCAAGTGGTGCTGTCACTGCTTCCCC
TGCTGCAGGGGGAGCGGCAAGAGCAACGTGGGCACTTGGGGAGACTACGACGACAGCGCCTTCATGGAGC
CGAGGTACCACGTCCGTCGAGAAGATCTGGACAAGCTCCACAGAGCTGCCTGGTGGGGTAAAGTCCCCAG
AAAGGATCTCATCGTCATGCTCAGGGACACTGACATGAACAAGAGGGACAAGCAAAAGAGGACTGCTCTA
CATTTGGCCTCTGCCAATGGAAATTCAGAAGTAGTACAACTCCTGCTGGACAGACGATGTCAACTTAACG
TCCTTGACAACAAAAAAAGGACAGCTCTGATAAAGGCCGTACAATGCCAGGAAGATGAATGTGTGTTAAT
GTTGCTGGAACATGGCGCTGATGGAAATATTCAAGATGAGTATGGAAATACCGCTCTACACTATGCTATC
TACAATGAAGATAAATTAATGGCCAAAGCACTGCTCTTATATGGTGCTGATATTGAATCAAAAAACAAGT
GTGGCCTCACACCACTTTTGCTTGGCGTACATGAACAAAAACAGGAAGTGGTGAAATTTTTAATCAAGAA
AAAAGCTAATTTAAATGCACTTGATAGATATGGAAGAACTGCCCTCATACTTGCTGTATGTTGTGGATCA
GCAAGTATAGTCAATCTTCTACTTGAGCAAAATGTTGATGTATCTTCTCAAGATCTATCTGGACAGACAG
CCAGAGAGTATGCTGTTTCTAGTCATCATCATGTAATTTGTGAATTACTTTCTGACTATAAAGAAAAACA
GATGCTAAAAATCTCTTCTGAAAACAGCAATCCAGAACAAGACTTAAAGCTGACATCAGAGGAAGAGTCA
CAAAGGCTTAAAGTCAGTGAAAATAGCCAGCCAGAGAAAATGTCTCAAGAACCAGAAATAAATAAGGACT
GTGATAGAGAGGTTGAAGAAGAAATAAAGAAGCATGGAAGTAATCCTGTGGGATTACCAGAAAACCTGAC
TAATGGTGCCAGTGCTGGCAATGGTGATGATGGATTAATTCCACAAAGGAAGAGCAGAAAACCTGAAAAT
CAGCAATTTCCTGACACTGAGAATGAAGAGTATCACAGTGACGAACAAAATGATACCCAGAAACAACTTT
CTGAAGAACAGAACACTGGAATATCACAAGATGAGATTCTGACTAATAAACAAAAGCAGATAGAAGTGGC
TGAAAAGGAAATGAATTCTGAGCTTTCTCTTAGTCATAAGAAAGAAGAAGATCTCTTGCGTGAAAACAGC
ATGTTGCGGGAAGAAATTGCCAAGCTAAGACTGGAACTAGATGAAACAAAACATCAGAACCAGCTAAGGG
AAAATAAAATTTTGGAGGAAATTGAAAGTGTAAAAGAAAAACTTCTAAAGACTATACAACTGAATGAAGA
AGCATTAACGAAAACCAGTATTTAA

Translation (544 aa):
MVAEVCSMPAASAVKKPFDLRSKMGKWCHHRFPCCRGSGTSNVGTSGDHDDSFMKTLRSKMGKWCCHCFP
CCRGSGKSNVGTWGDYDDSAFMEPRYHVRREDLDKLHRAAWWGKVPRKDLIVMLRDTDMNKRDKQKRTAL
HLASANGNSEVVQLLLDRRCQLNVLDNKKRTALIKAVQCQEDECVLMLLEHGADGNIQDEYGNTALHYAI
YNEDKLMAKALLLYGADIESKNKCGLTPLLLGVHEQKQEVVKFLIKKKANLNALDRYGRTALILAVCCGS
ASIVNLLLEQNVDVSSQDLSGQTAREYAVSSHHHVICELLSDYKEKQMLKISSENSNPEQDLKLTSEEES
QRLKVSENSQPEKMSQEPEINKDCDREVEEEIKKHGSNPVGLPENLTNGASAGNGDDGLIPQRKSRKPEN
QQFPDTENEEYHSDEQNDTQKQLSEEQNTGISQDEILTNKQKQIEVAEKEMNSELSLSHKKEEDLLRENS
MLREEIAKLRLELDETKHQNQLRENKILEEIESVKEKLLKTIQLNEEALTKTSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH