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Report for CCDS26975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26975.1 Public Mus musculus 14 Styx 23 108 98 CCDS HistoryNCBI Gene:56291Re-query CCDS DB by CCDS ID:26975.1Re-query CCDS DB by GeneID:56291See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26975.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000226873.1 ENSMUSP00000153854.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226873.1Link to Ensembl Protein Viewer:ENSMUSP00000153854.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226873Re-query CCDS DB by Protein ID:ENSMUSP00000153854
Original member Current member EBI ENSMUST00000228311.1 ENSMUSP00000154148.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228311.1Link to Ensembl Protein Viewer:ENSMUSP00000154148.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228311Re-query CCDS DB by Protein ID:ENSMUSP00000154148
Original member Current member NCBI NM_019637.3 NP_062611.2 Accepted alive Link to Nucleotide Sequence:NM_019637.3Link to Protein Sequence:NP_062611.2Re-query CCDS DB by Nucleotide ID:NM_019637Re-query CCDS DB by Protein ID:NP_062611Link to BLAST:NP_062611.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062611.2 223 Q60969-1 223 100% 0 0

Chromosomal Locations for CCDS 26975.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 45351473 45351529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45354946 45354978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45356713 45356766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45359259 45359356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45366599 45366659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45367682 45367718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45368307 45368346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45368421 45368471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45371019 45371091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45372385 45372478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45373512 45373585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGGAGGACGTGAAACTGGAGTTCCCCTCGCTCCCGCAGTGCAAAGACGACGCCGAGGAGTGGACTTACC
CTATGAGACGAGAGATGCAGGAAGTTTTGCCTGGATTGTTCTTAGGCCCATACTCTTCTGCTATGAAAAG
CAAGCTACCTATACTTCAGAAACATGGCATAACTCATATAATTTGCATACGGCAAAATATTGAAGCAAAC
TTTATTAAACCAAACTTTCAACAATTATTTAGATATTTAGTTTTGGATATTGCTGATAATCCAGTTGAAA
ACATAATACGTTTTTTCCCTATGACTAAAGAGTTTATTGATGGAAGCTTACAAAATGGAGGAAAAGTTCT
TGTCCATGGGAATGCAGGTATCTCTAGAAGTGCTGCCTTTGTCATTGCATACATCATGGAGACGTTTGGG
ATGAAATACAGAGATGCATTTGCTTATGTCCAAGAAAGGAGATTTTGTATTAATCCTAATGCTGGATTTG
TCCACCAACTTCAGGAATATGAAGCCATCTACTTAGCAAAATTAACAATACAGATGATGTCACCACTCCA
AATAGAAAGGTCCTTAGCTGTTCATTCTGGTACCACAGGTAGTGTGAAGAGAACACATGAGGAAGATGAC
GACTTTGGAAACATGCAAGTGGCAACCGCACAGAACGGCTGA

Translation (223 aa):
MEDVKLEFPSLPQCKDDAEEWTYPMRREMQEVLPGLFLGPYSSAMKSKLPILQKHGITHIICIRQNIEAN
FIKPNFQQLFRYLVLDIADNPVENIIRFFPMTKEFIDGSLQNGGKVLVHGNAGISRSAAFVIAYIMETFG
MKYRDAFAYVQERRFCINPNAGFVHQLQEYEAIYLAKLTIQMMSPLQIERSLAVHSGTTGSVKRTHEEDD
DFGNMQVATAQNG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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