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Report for CCDS38621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38621.1 Public Mus musculus 3 Sec24d 23 108 98 CCDS HistoryNCBI Gene:69608Re-query CCDS DB by CCDS ID:38621.1Re-query CCDS DB by GeneID:69608See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38621.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047923.11 ENSMUSP00000035823.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047923.11Link to Ensembl Protein Viewer:ENSMUSP00000035823.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047923Re-query CCDS DB by Protein ID:ENSMUSP00000035823
Original member Current member NCBI NM_027135.2 NP_081411.2 Accepted alive Link to Nucleotide Sequence:NM_027135.2Link to Protein Sequence:NP_081411.2Re-query CCDS DB by Nucleotide ID:NM_027135Re-query CCDS DB by Protein ID:NP_081411Link to BLAST:NP_081411.2

Chromosomal Locations for CCDS 38621.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 123269636 123269753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123279145 123279268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123290416 123290564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123293578 123293853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123294159 123294292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123299557 123299668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123305793 123305920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123327508 123327646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123330324 123330439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123336486 123336610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123343041 123343232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123343824 123343917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123349909 123350025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123350700 123350870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123353390 123353486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123353576 123353721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123354947 123355085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123355723 123355841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123358837 123359016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123360820 123361011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123362634 123362723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123364821 123364961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3099 nt):
ATGAGCCAACAAGGCTATGTGGCGACACCCCCTTATTCTCAGTCCCAGCCTGGAATGGGTATCTCTCCCC
CTCACTACGGACACTATGGGGACCCGTCCCATGCATCCTCTCCACCAGGCGTGATGAAGCCATTGGGGCC
TTCAGCTGCTCCTTCAGGGATGCTGCCCCCAGGTCCTTTACCTCCTGGACCCCCACAGTTTGGCCCCAAT
GGAGCCCATACTCCAGGCCATCCTCCTCAAAGATTTCCAGGACCCCCACCTGTCAATAGTGTGGCACCCT
CTTATGCGTCAGGCCAGACCCTGCCACAGTCATCTTACCCAGGCCCTGGGTCCACTTCCTCTGTCACCCA
GCTGGGCAGTCAGTTCAGCTCCATGCAGATCAACAGCTATGGTGTGGGCGCGACTCCTCAGAGCCAGGGT
CCGCCTGGCCCCCAGTCAGCAGGCGCCTTCCAGGGGCCTCCACAACCTGCACAGCCATCTATTCTGCAGC
CAGGACATCAGGTTCCGCCGCCACCCCCCACTGCCCTGAACGGCCCTGGTGCCTCTCCTATGTCTCCACC
AACTCACAGGCAAGATGGCCTTCCTGGGCCAGCTCCTCTGAACGCCCAGTATCAGCCCCCACCTCCACCA
GGCCAGACCCTGGGTCCTGGCTACCCTCCACAGCAAGCAACCAACTATGGACCGCAGATGGGAGGTGCAC
AGATGTCTTACCCAGGAGGGTTCCCTGGAGGTCCTGCCCAGATGGCTGGGCCGGCACCACAGCTCCAGAG
GAAGCTGGATCCGGACTCCATCCCCAGCCCTATTCAAGTGATCGAGAATGACAGGGCCACCAGAGGTGGA
CAAGTCTATACGACCAATACCAGGGGCCAGGTACCTCCACTGGTCACCACCGAGTGTGTGATTCAAGACC
AAGGCCACTCGAGCCCCCGCTATATCCGCTGCACTACGTATTGCTTTCCGTGCACGTCCGACATGGCCAA
GCAAGCTCAGATCCCACTGGCTGCCGTCATCAAACCCTTCGCTGACATTCCGCCCAACGAGACCCCCTTG
TACTTGGTAAACCATGGGGAGAGTGGACCAGTGAGGTGCAACAGGTGCAAAGCCTACATGTGCCCGTTCA
TGCAATTCATCGAAGGCGGACGGCGCTATCAGTGCGGATTCTGCAGCTGTGTGAATGAAGTCCCACCATT
CTATTTCCAACATCTGGACCACATTGGAAGGAGATTGGACCACTATGAGAAGCCAGAGCTGTCGCTGGGA
TCCTATGAATATGTTGCTACATTGGATTACTGCAGAAAGAATAAACCTCCCAGCCCACCAGCCTTCATCT
TCATGATTGATGTCTCATATAGTAACATAAAGAATGGCCTCGTCAAGCTCATATGTGAAGAGCTGAAGAC
CGCGCTGAAGCGGCTACCCAAGGAGGAGCATGAGGAGACGTCTGCAATCCGAGTTGGTTTCATCACATAC
AACAAAGTTCTCCACTTCTTTAACGTGAAGAGTAATCTGGCCCAGCCTCAGATGATGGTGGTGACGGATG
TCGGAGAGGTCTTTGTTCCTTTGTTGGATGGGTTCCTTGTCAACTATGAAGAATCTCAATCTGTGATCCA
CAATTTATTGGACCAGATTCCTGAGATGTTTGCTGACTCTAATGAAAACGAGACAGTCTTTGCCCCGGTC
ATCCAGGCCGGCATGGAGGCCCTGAAGGCAGCAGAGTGCCCGGGGAAGCTCTTCATCTTCCATTCCTCTT
TGCCTACTGCCGAAGCACCGGGGAAGCTCAAGAACAGAGACGACAAAAAGCTGGTGAACACAGACAAAGA
GAAGATACTTTTCCAGCCCCAAACAGCTGTCTACGAATCTCTGGCCAAAGACTGTGTGGCCAACAGCTGC
TCAGTGACTCTGTTCCTCTTCCCCAGTCAGTTTGTGGATGTGGCTTCCTTGGGTCTGGTTCCTCTGCTCA
CGGGAGGAACTCTTTACAAATACAACGTTTTCCAGATACATTCAGATAGCCAAAGGTTTCTGACCGACCT
CCGGAATGATATTGAGAAGAAAATAGGCTTCGATGCTATCATGAGGGTTCGGACCAGCACAGGTTTCAGG
GCCACTGATTTCTTTGGTGGAATATTCATGAACAACACCACAGATGTGGAAATGGCGGCCATCGACTGCG
ATAAAGCCGTGACAGTGGAGTTCAAGCACGATGACAAGCTCAGTGAAGATGTCGGGGCCCTGATCCAGTG
TGCTGTGCTCTACACGACCATCAGTGGTCAGCGAAGACTCCGGATTCACAATCTCGCCTTAAACTGCAGC
ACCCAGCTAGCGGATCTGTACAAGAGCTGTGAAACTGATGCCCTTATCAACTTCTTTGCCAAGTCAGCTT
TTAAAGCAGTTTTGAACCAGCCCTTGAAGGCCATCCGGGAAATTCTAGTCAATCAGACTGCCCATATGCT
GGCGTGTTACCGGAAGCACTGTGCGAGTCCGTCTGCAGCAAGCCAGCTTATACTGCCAGATTCCATGAAG
GTGCTGCCTGTGTACATGAACAGTTTGTTGAAAAACTGTGTGCTGCTCAGCAGATCGGAGATCTCCCCTG
ATGAGCGGGCTTACCAGCGGCAGCTGGTCATGACCATGGGCGTGGCTGACTCCCAGCTCTTCTTCTATCC
ACTGCTCCTGCCAATCCACACGTTAGATGTGAAGAGTGCAGCGCTGCCACCAGCCGTCCGCTGCTCCGAG
TCCCGACTCTCTGAAGAAGGAATATTCCTGCTGGCTAACGGTCTGAACATGTTCTTATGGTTTGGAGTGG
GCAGCCCACCAGAGCTGATTCAGGGAATATTTAATGTGCCATCGTTTGCACATATCAACACAGATATGAC
ATCGCTGCCTGAGGTGGGAAGTCCACACTCTCAACAACTCAGAATGATAATGAATAATATCCAGCAAAAG
AAGCCATACTCAATGAAGCTCATCGTGGTTAAACAGCGAGAGCAGCGGGAGATGGCTTTCCGACAGTTCC
TGGTGGAAGATAAAGGGCTCTATGGAGGATCTTCGTACGTGGATTTCCTCTGCTGTGTTCACAAGGAGAT
CTGTCAACTGCTTAACTGA

Translation (1032 aa):
MSQQGYVATPPYSQSQPGMGISPPHYGHYGDPSHASSPPGVMKPLGPSAAPSGMLPPGPLPPGPPQFGPN
GAHTPGHPPQRFPGPPPVNSVAPSYASGQTLPQSSYPGPGSTSSVTQLGSQFSSMQINSYGVGATPQSQG
PPGPQSAGAFQGPPQPAQPSILQPGHQVPPPPPTALNGPGASPMSPPTHRQDGLPGPAPLNAQYQPPPPP
GQTLGPGYPPQQATNYGPQMGGAQMSYPGGFPGGPAQMAGPAPQLQRKLDPDSIPSPIQVIENDRATRGG
QVYTTNTRGQVPPLVTTECVIQDQGHSSPRYIRCTTYCFPCTSDMAKQAQIPLAAVIKPFADIPPNETPL
YLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCSCVNEVPPFYFQHLDHIGRRLDHYEKPELSLG
SYEYVATLDYCRKNKPPSPPAFIFMIDVSYSNIKNGLVKLICEELKTALKRLPKEEHEETSAIRVGFITY
NKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLVNYEESQSVIHNLLDQIPEMFADSNENETVFAPV
IQAGMEALKAAECPGKLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTAVYESLAKDCVANSC
SVTLFLFPSQFVDVASLGLVPLLTGGTLYKYNVFQIHSDSQRFLTDLRNDIEKKIGFDAIMRVRTSTGFR
ATDFFGGIFMNNTTDVEMAAIDCDKAVTVEFKHDDKLSEDVGALIQCAVLYTTISGQRRLRIHNLALNCS
TQLADLYKSCETDALINFFAKSAFKAVLNQPLKAIREILVNQTAHMLACYRKHCASPSAASQLILPDSMK
VLPVYMNSLLKNCVLLSRSEISPDERAYQRQLVMTMGVADSQLFFYPLLLPIHTLDVKSAALPPAVRCSE
SRLSEEGIFLLANGLNMFLWFGVGSPPELIQGIFNVPSFAHINTDMTSLPEVGSPHSQQLRMIMNNIQQK
KPYSMKLIVVKQREQREMAFRQFLVEDKGLYGGSSYVDFLCCVHKEICQLLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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