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Genome Displays Related Resources Gene HomoloGene MANE RefSeq
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Report for CCDS35500.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
35500.2 |
Public |
Homo sapiens |
19 |
ZNF550 |
24 |
110 |
108 |
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Public Note for CCDS 35500.1 |
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data. All transcripts that can encode this protein are candidates for nonsense-mediated mRNA decay (NMD), but in the absence of transcripts that are not NMD candidates, this representation is considered an NMD exception because the gene is believed to be protein-coding. |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
Nonsense-mediated decay (NMD) candidate |
Sequence IDs included in CCDS 35500.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENST00000376230.7 |
ENSP00000469537.1 |
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Accepted |
alive |
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EBI |
ENST00000447310.5 |
ENSP00000469580.1 |
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Accepted |
alive |
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EBI |
ENST00000457177.5 |
ENSP00000469679.1 |
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Accepted |
alive |
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EBI |
ENST00000699333.1 |
ENSP00000514306.1 |
MANE Select |
Accepted |
alive |
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NCBI |
NM_001277090.2 |
NP_001264019.1 |
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Accepted |
alive |
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NCBI |
NM_001277091.2 |
NP_001264020.1 |
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Accepted |
alive |
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NCBI |
NM_001277092.2 |
NP_001264021.1 |
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Accepted |
alive |
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NCBI |
NM_001397372.1 |
NP_001384301.1 |
MANE Select |
Accepted |
alive |
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Chromosomal Locations for CCDS 35500.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1269 nt): ATGGCGGAGACGAAGGACGCAGCGCAGATGTTGGTGACCTTCAAGGATGTGGCTGTGACCTTTACCCGGG AGGAGTGGAGACAGCTGGACCTGGCCCAGAGGACCCTGTACCGAGAGGTGATGCTGGAGACCTGTGGGCT TCTGGTTTCACTAGGGCATCGGGTTCCCAAACCAGAGTTGGTCCACCTGCTAGAGCATGGGCAGGAGCTG TGGATAGTGAAGAGAGGCCTCTCACATGCTACCTGTGCAGGTGACAGAGCACAAGTTCATACCAGAGAGC CAACCACTTACCCGCCAGTCTTATCTGAGCGGGCCTTTCTCCGGGGAAGCCTGACTCTGGAATCTTCAAC CTCAAGTGATTCGAGGTTGGGGAGAGCTAGGGATGAGGAAGGGCTTTTGGAAATGCAGAAAGGTAAAGTG ACACCGGAGACAGACCTCCACAAGGAGACCCATCTTGGGAAAGTGAGCCTTGAAGGTGAAGGTTTGGGGA CAGATGATGGTCTGCACTCCAGGGCATTACAAGAGTGGTTATCAGCAGATGTTCTCCATGAATGTGACTC ACAGCAACCAGGGAAAGACGCCTTGATTCATGCAGGGACAAACCCCTACAAATGCAAGCAGTGTGGGAAA GGTTTTAACAGGAAGTGGTATCTCGTTCGACATCAGAGGGTTCACACTGGAATGAAACCCTATGAATGCA ATGCATGTGGGAAAGCCTTTAGCCAGAGCTCAACTCTCATTCGGCACTACCTCATCCACACCGGGGAGAA ACCATACAAGTGCCTTGAGTGTGGGAAGGCCTTCAAACGCAGGTCGTACCTCATGCAGCACCATCCAATC CACACTGGAGAGAAACCCTATGAGTGTAGTCAATGTCGAAAGGCCTTCACCCACCGGTCTACTTTTATTC GCCATAATAGGACCCACACTGGAGAAAAGCCCTTTGAGTGCAAAGAATGTGAGAAAGCCTTTAGCAATAG AGCCCACCTAATTCAACATTACATCATCCACACTGGAGAGAAGCCCTATGATTGCATGGCATGTGGAAAG GCCTTCAGATGCAGCTCAGAACTCATACAGCACCAGCGGATTCACACTGGGGAGAAGCCCTATGAATGCA CCCAGTGTGGGAAAGCCTTTCACCGGAGCACGTACCTCATTCAGCACTCTGTCATCCACACTGGGGAGAT GCCCTACAAGTGTATCGAGTGTGGGAAGGCCTTCAAACGCAGGTCACACCTTCTGCAGCACCAAAGGGTC CATACATGA
Translation (422 aa): MAETKDAAQMLVTFKDVAVTFTREEWRQLDLAQRTLYREVMLETCGLLVSLGHRVPKPELVHLLEHGQEL WIVKRGLSHATCAGDRAQVHTREPTTYPPVLSERAFLRGSLTLESSTSSDSRLGRARDEEGLLEMQKGKV TPETDLHKETHLGKVSLEGEGLGTDDGLHSRALQEWLSADVLHECDSQQPGKDALIHAGTNPYKCKQCGK GFNRKWYLVRHQRVHTGMKPYECNACGKAFSQSSTLIRHYLIHTGEKPYKCLECGKAFKRRSYLMQHHPI HTGEKPYECSQCRKAFTHRSTFIRHNRTHTGEKPFECKECEKAFSNRAHLIQHYIIHTGEKPYDCMACGK AFRCSSELIQHQRIHTGEKPYECTQCGKAFHRSTYLIQHSVIHTGEMPYKCIECGKAFKRRSHLLQHQRV HT
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