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Report for CCDS29412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29412.1 Public Mus musculus 19 Gstp2 23 108 98 CCDS HistoryNCBI Gene:14869Re-query CCDS DB by CCDS ID:29412.1Re-query CCDS DB by GeneID:14869See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29412.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042700.11 ENSMUSP00000038931.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042700.11Link to Ensembl Protein Viewer:ENSMUSP00000038931.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000042700Re-query CCDS DB by Protein ID:ENSMUSP00000038931
Original member Current member NCBI NM_181796.2 NP_861461.1 Accepted alive Link to Nucleotide Sequence:NM_181796.2Link to Protein Sequence:NP_861461.1Re-query CCDS DB by Nucleotide ID:NM_181796Re-query CCDS DB by Protein ID:NP_861461Link to BLAST:NP_861461.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_861461.1 210 P46425 210 100% 0 0

Chromosomal Locations for CCDS 29412.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4040351 4040539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4040708 4040815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4040982 4041085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4041398 4041485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4041584 4041690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4041903 4041938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4042165 4042165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGCCGCCGTACACCATTGTCTACTTCCCAAGTCCAGGGCGGTGTGAGGCCATGCGCATGCTGCTGGCTG
ACCAGGGCCAGAGCTGGAAGGAGGAGGTGGTTACCATAGATACCTGGATGCAAGGCTTGCTCAAGCCCAC
TTGTCTGTATGGGCAGCTCCCCAAGTTTGAGGATGGAGACCTCACCCTTTACCAATCTAATGCCATCTTG
AGACACCTTGGCCGCTCTTTGGGGCTTTATGGGAAAAACCAGAGGGAGGCCGCCCAGGTGGATATGGTGA
ATGATGGGGTGGAGGACCTTCGCGGCAAATATGGCACCATGATCTACAGAAACTATGAGAATGGTAAGAA
TGACTACGTGAAGGCCCTGCCTGGGCATCTGAAGCCTTTTGAGACCCTGCTGTCCCAGAACCAGGGAGGC
AAAGCTTTCATCGTGGGTGACCAGATCTCCTTTGCCGATTACAACTTGCTGGACCTGCTGCTGATCCACC
AAGTCCTGGCCCCTGGCTGCCTGGACAACTTCCCCCTGCTCTCTGCCTATGTGGCTCGCCTCAGTGCCCG
GCCCAAGATCAAGGCCTTTCTGTCCTCCCCGGAACATGTGAACCGTCCCATCAATGGCAATGGCAAACAG
TAG

Translation (210 aa):
MPPYTIVYFPSPGRCEAMRMLLADQGQSWKEEVVTIDTWMQGLLKPTCLYGQLPKFEDGDLTLYQSNAIL
RHLGRSLGLYGKNQREAAQVDMVNDGVEDLRGKYGTMIYRNYENGKNDYVKALPGHLKPFETLLSQNQGG
KAFIVGDQISFADYNLLDLLLIHQVLAPGCLDNFPLLSAYVARLSARPKIKAFLSSPEHVNRPINGNGKQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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