NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1853.1 Public Homo sapiens 2 MTIF2 24 110 108 CCDS HistoryNCBI Gene:4528Re-query CCDS DB by CCDS ID:1853.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1853.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263629.9 ENSP00000263629.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263629.9Link to Ensembl Protein Viewer:ENSP00000263629.4Re-query CCDS DB by Nucleotide ID:ENST00000263629Re-query CCDS DB by Protein ID:ENSP00000263629
Original member Current member EBI ENST00000394600.7 ENSP00000378099.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394600.7Link to Ensembl Protein Viewer:ENSP00000378099.3Re-query CCDS DB by Nucleotide ID:ENST00000394600Re-query CCDS DB by Protein ID:ENSP00000378099
Original member Current member EBI ENST00000403721.5 ENSP00000384481.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403721.5Link to Ensembl Protein Viewer:ENSP00000384481.1Re-query CCDS DB by Nucleotide ID:ENST00000403721Re-query CCDS DB by Protein ID:ENSP00000384481
Original member Current member NCBI NM_001005369.1 NP_001005369.1 Accepted alive Link to Nucleotide Sequence:NM_001005369.1Link to Protein Sequence:NP_001005369.1Re-query CCDS DB by Nucleotide ID:NM_001005369Re-query CCDS DB by Protein ID:NP_001005369Link to BLAST:NP_001005369.1
Original member Current member NCBI NM_001321001.1 NP_001307930.1 Accepted alive Link to Nucleotide Sequence:NM_001321001.1Link to Protein Sequence:NP_001307930.1Re-query CCDS DB by Nucleotide ID:NM_001321001Re-query CCDS DB by Protein ID:NP_001307930Link to BLAST:NP_001307930.1
Original member Current member NCBI NM_001321002.1 NP_001307931.1 Accepted alive Link to Nucleotide Sequence:NM_001321002.1Link to Protein Sequence:NP_001307931.1Re-query CCDS DB by Nucleotide ID:NM_001321002Re-query CCDS DB by Protein ID:NP_001307931Link to BLAST:NP_001307931.1
Original member Current member NCBI NM_001321003.1 NP_001307932.1 Accepted alive Link to Nucleotide Sequence:NM_001321003.1Link to Protein Sequence:NP_001307932.1Re-query CCDS DB by Nucleotide ID:NM_001321003Re-query CCDS DB by Protein ID:NP_001307932Link to BLAST:NP_001307932.1
Original member Current member NCBI NM_001321004.1 NP_001307933.1 Accepted alive Link to Nucleotide Sequence:NM_001321004.1Link to Protein Sequence:NP_001307933.1Re-query CCDS DB by Nucleotide ID:NM_001321004Re-query CCDS DB by Protein ID:NP_001307933Link to BLAST:NP_001307933.1
Original member Current member NCBI NM_002453.3 NP_002444.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002453.3Link to Protein Sequence:NP_002444.2Re-query CCDS DB by Nucleotide ID:NM_002453Re-query CCDS DB by Protein ID:NP_002444Link to BLAST:NP_002444.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005369.1 727 P46199 727 100% 0 0
NP_001307930.1 727 P46199 727 100% 0 0
NP_001307931.1 727 P46199 727 100% 0 0
NP_001307932.1 727 P46199 727 100% 0 0
NP_001307933.1 727 P46199 727 100% 0 0
NP_002444.2 727 P46199 727 100% 0 0

Chromosomal Locations for CCDS 1853.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 55236648 55236820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55237288 55237428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55240011 55240175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55242940 55243080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55243416 55243668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55244029 55244233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55246337 55246461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55249395 55249534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55252477 55252653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55254041 55254201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55254654 55254825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55262316 55262427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55263640 55263858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGAACCAGAAGCTACTGAAGTTGGAGAACTTGCTACGATTTCACACTATTTATAGGCAACTGCACAGTC
TGTGTCAAAGAAGAGCATTAAGACAGTGGAGGCATGGGTTTTCATCTGCTTACCCTGTGTGGACAGCTCA
ACTGTGTGCCTGGCCCTGGCCAACAGATGTGCTCACTGGGGCTGCTTTATCTCAGTATAGGCTTCTAGTA
ACAAAAAAGGAAGAAGGACCATGGAAATCTCAGTTATCTTCAACAAAATCTAAAAAGGTGGTAGAAGTAT
GGATTGGAATGACTATTGAGGAACTGGCCAGGGCAATGGAAAAAAACACAGATTATGTATATGAAGCTTT
ATTGAACACTGATATTGACATAGATTCACTGGAAGCAGACTCACATTTAGATGAAGTCTGGATCAAAGAA
GTGATAACGAAGGCAGGGATGAAGTTAAAGTGGAGTAAATTAAAACAGGACAAAGTCAGAAAAAATAAAG
ATGCTGTAAGAAGGCCCCAGGCAGATCCAGCTTTATTAACCCCAAGGTCCCCAGTTGTTACTATAATGGG
CCATGTTGATCACGGGAAAACGACATTACTTGACAAATTTCGAAAAACTCAAGTGGCAGCAGTGGAAACT
GGAGGCATCACTCAGCACATTGGTGCCTTTCTTGTCTCTCTGCCTTCTGGGGAAAAGATAACTTTTCTTG
ATACTCCAGGACATGCTGCTTTCTCAGCAATGAGAGCCAGAGGTGCTCAGGTCACTGACATTGTCGTATT
GGTTGTAGCTGCAGATGATGGAGTGATGAAACAAACTGTAGAATCTATTCAGCATGCCAAAGATGCACAG
GTTCCTATTATCCTTGCCGTAAATAAATGTGACAAAGCTGAGGCTGATCCTGAGAAAGTGAAAAAAGAGC
TGCTGGCTTACGATGTGGTATGTGAAGATTATGGAGGTGATGTTCAAGCAGTGCCTGTCTCCGCACTTAC
GGGCGATAATCTGATGGCTTTGGCAGAAGCAACAGTTGCTCTTGCAGAAATGTTAGAATTGAAAGCAGAT
CCCAATGGTCCAGTGGAAGGAACAGTAATAGAGTCTTTCACAGACAAAGGAAGAGGTCTTGTTACTACAG
CTATAATTCAAAGAGGAACTTTAAGAAAAGGCTCTGTTCTGGTTGCTGGAAAATGTTGGGCAAAAGTACG
CTTAATGTTTGATGAAAATGGAAAAACAATTGATGAGGCCTATCCCAGCATGCCAGTGGGAATTACAGGC
TGGAGAGACCTTCCTTCTGCAGGAGAAGAAATTCTTGAAGTAGAATCTGAGCCAAGGGCACGTGAAGTTG
TTGACTGGAGGAAATATGAACAAGAACAGGAGAAAGGTCAGGAGGATCTGAAAATAATAGAAGAAAAGCG
AAAGGAACACAAAGAAGCACATCAGAAAGCCCGTGAGAAGTATGGCCATCTACTGTGGAAGAAGAGATCA
ATTCTACGGTTTTTAGAAAGAAAAGAACAAATACCCTTAAAGCCAAAAGAGAAAAGGGAAAGAGATTCAA
ATGTACTTTCTGTGATTATTAAAGGTGATGTTGATGGTTCTGTTGAGGCCATTTTGAACATTATAGATAC
CTATGATGCTTCACACGAGTGTGAACTAGAATTAGTACATTTTGGAGTGGGTGATGTAAGTGCAAATGAT
GTTAACCTTGCTGAAACATTTGATGGTGTTATATATGGCTTTAATGTGAATGCAGGCAATGTTATCCAAC
AGTCAGCTGCAAAAAAAGGAGTAAAAATTAAACTTCACAAAATAATTTACCGTCTTGTTGAAGATTTGCA
AGAGGAACTGAGCAGCAGATTACCCTGTGCTGTGGAAGAGCACCCAGTAGGTGAGGCATCTATACTAGCT
ACCTTCTCTGTAACAGAAGGGAAGAAAAAAGTTCCTGTGGCTGGCTGCAGAGTCCAAAAGGGACAGTTAG
AAAAACAAAAAAAATTTAAACTAACCCGTAATGGACATGTAATTTGGAAGGGCTCATTAACCTCATTGAA
ACACCATAAAGATGACATTTCAATTGTCAAAACGGGAATGGATTGTGGTCTCAGTTTAGATGAAGACAAT
ATGGAATTTCAAGTGGGAGACAGAATTGTTTGTTATGAAGAAAAGCAAATTCAAGCCAAGACTTCTTGGG
ATCCAGGATTTTAA

Translation (727 aa):
MNQKLLKLENLLRFHTIYRQLHSLCQRRALRQWRHGFSSAYPVWTAQLCAWPWPTDVLTGAALSQYRLLV
TKKEEGPWKSQLSSTKSKKVVEVWIGMTIEELARAMEKNTDYVYEALLNTDIDIDSLEADSHLDEVWIKE
VITKAGMKLKWSKLKQDKVRKNKDAVRRPQADPALLTPRSPVVTIMGHVDHGKTTLLDKFRKTQVAAVET
GGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMKQTVESIQHAKDAQ
VPIILAVNKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVPVSALTGDNLMALAEATVALAEMLELKAD
PNGPVEGTVIESFTDKGRGLVTTAIIQRGTLRKGSVLVAGKCWAKVRLMFDENGKTIDEAYPSMPVGITG
WRDLPSAGEEILEVESEPRAREVVDWRKYEQEQEKGQEDLKIIEEKRKEHKEAHQKAREKYGHLLWKKRS
ILRFLERKEQIPLKPKEKRERDSNVLSVIIKGDVDGSVEAILNIIDTYDASHECELELVHFGVGDVSAND
VNLAETFDGVIYGFNVNAGNVIQQSAAKKGVKIKLHKIIYRLVEDLQEELSSRLPCAVEEHPVGEASILA
TFSVTEGKKKVPVAGCRVQKGQLEKQKKFKLTRNGHVIWKGSLTSLKHHKDDISIVKTGMDCGLSLDEDN
MEFQVGDRIVCYEEKQIQAKTSWDPGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH