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Report for CCDS23518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23518.1 Public Mus musculus 9 Dag1 23 108 98 CCDS HistoryNCBI Gene:13138Re-query CCDS DB by CCDS ID:23518.1Re-query CCDS DB by GeneID:13138See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23518.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080435.8 ENSMUSP00000079294.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080435.8Link to Ensembl Protein Viewer:ENSMUSP00000079294.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080435Re-query CCDS DB by Protein ID:ENSMUSP00000079294
Original member Current member EBI ENSMUST00000166905.7 ENSMUSP00000128531.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166905.7Link to Ensembl Protein Viewer:ENSMUSP00000128531.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166905Re-query CCDS DB by Protein ID:ENSMUSP00000128531
Original member Current member EBI ENSMUST00000171412.6 ENSMUSP00000130626.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171412.6Link to Ensembl Protein Viewer:ENSMUSP00000130626.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171412Re-query CCDS DB by Protein ID:ENSMUSP00000130626
Original member Current member EBI ENSMUST00000191899.5 ENSMUSP00000142109.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191899.5Link to Ensembl Protein Viewer:ENSMUSP00000142109.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191899Re-query CCDS DB by Protein ID:ENSMUSP00000142109
Original member Current member NCBI NM_001276481.1 NP_001263410.1 Accepted alive Link to Nucleotide Sequence:NM_001276481.1Link to Protein Sequence:NP_001263410.1Re-query CCDS DB by Nucleotide ID:NM_001276481Re-query CCDS DB by Protein ID:NP_001263410Link to BLAST:NP_001263410.1
Original member Current member NCBI NM_001276482.1 NP_001263411.1 Accepted alive Link to Nucleotide Sequence:NM_001276482.1Link to Protein Sequence:NP_001263411.1Re-query CCDS DB by Nucleotide ID:NM_001276482Re-query CCDS DB by Protein ID:NP_001263411Link to BLAST:NP_001263411.1
Original member Current member NCBI NM_001276485.1 NP_001263414.1 Accepted alive Link to Nucleotide Sequence:NM_001276485.1Link to Protein Sequence:NP_001263414.1Re-query CCDS DB by Nucleotide ID:NM_001276485Re-query CCDS DB by Protein ID:NP_001263414Link to BLAST:NP_001263414.1
Original member Current member NCBI NM_001276486.1 NP_001263415.1 Accepted alive Link to Nucleotide Sequence:NM_001276486.1Link to Protein Sequence:NP_001263415.1Re-query CCDS DB by Nucleotide ID:NM_001276486Re-query CCDS DB by Protein ID:NP_001263415Link to BLAST:NP_001263415.1
Original member Current member NCBI NM_001276492.1 NP_001263421.1 Accepted alive Link to Nucleotide Sequence:NM_001276492.1Link to Protein Sequence:NP_001263421.1Re-query CCDS DB by Nucleotide ID:NM_001276492Re-query CCDS DB by Protein ID:NP_001263421Link to BLAST:NP_001263421.1
Original member Current member NCBI NM_001276493.1 NP_001263422.1 Accepted alive Link to Nucleotide Sequence:NM_001276493.1Link to Protein Sequence:NP_001263422.1Re-query CCDS DB by Nucleotide ID:NM_001276493Re-query CCDS DB by Protein ID:NP_001263422Link to BLAST:NP_001263422.1
Original member Current member NCBI NM_010017.4 NP_034147.1 Accepted alive Link to Nucleotide Sequence:NM_010017.4Link to Protein Sequence:NP_034147.1Re-query CCDS DB by Nucleotide ID:NM_010017Re-query CCDS DB by Protein ID:NP_034147Link to BLAST:NP_034147.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263410.1 893 Q62165 893 100% 0 0
NP_001263411.1 893 Q62165 893 100% 0 0
NP_001263414.1 893 Q62165 893 100% 0 0
NP_001263415.1 893 Q62165 893 100% 0 0
NP_001263421.1 893 Q62165 893 100% 0 0
NP_001263422.1 893 Q62165 893 100% 0 0
NP_034147.1 893 Q62165 893 100% 0 0

Chromosomal Locations for CCDS 23518.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 108207259 108209661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108218013 108218291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2682 nt):
ATGTCTGTGGACAACTGGCTACTGCACCCCCTCTGGGGACAGACCTTTCTCCTCCTCCTGTCTGTGGCTG
TGGCTCAGGCCCACTGGCCCAGTGAACCCTCAGAGGCTGTGAGGGACTGGAAGAACCAGCTTGAGGCGTC
CATGCACTCAGTTCTCTCCGACTTCCAGGAGGCTGTTCCCACCGTGGTTGGCATTCCAGACGGTACGGCT
GTTGTCGGGCGCTCATTTCGAGTGAGCATTCCAACGGATTTAATTGCCTCCAGTGGGGAGATCATCAAGG
TGTCTGCAGCAGGGAAGGAGGCCTTACCGTCTTGGCTACACTGGGACCCACACAGTCATATTTTGGAAGG
CCTTCCTCTTGACACTGATAAAGGTGTGCATTACATCTCAGTGAGTGCTGCACGCCTGGGAGCCAATGGA
AGCCACGTCCCCCAGACTTCCAGTGTGTTCTCTATCGAGGTCTACCCTGAAGACCACAATGAGCCACAGT
CTGTACGGGCAGCCTCATCAGACCCTGGTGAGGTAGTGCCATCTGCCTGTGCTGCTGATGAGCCAGTGAC
TGTCCTTACAGTGATTCTGGATGCTGACCTCACCAAGATGACCCCAAAGCAAAGGATCGATCTGTTGAAC
AGAATGCAGAGCTTCTCAGAAGTAGAACTTCACAACATGAAGTTGGTGCCTGTAGTGAATAATAGACTAT
TTGACATGTCGGCCTTCATGGCTGGCCCAGGAAATGCAAAGAAAGTGGTAGAGAATGGGGCTCTCCTGTC
CTGGAAACTAGGCTGCTCCTTGAACCAGAATAGCGTCCCTGACATCCGTGGTGTAGAAACCCCTGCTAGG
GAGGGTGCTATGTCTGCCCAACTTGGTTATCCTGTGGTGGGTTGGCACATTGCCAATAAGAAGCCCACTC
TCCCCAAACGACTCCGGAGGCAGATCCACGCCACACCTACACCTGTTACTGCCATTGGACCCCCAACCAC
GGCCATTCAGGAGCCACCATCGCGGATAGTGCCTACGCCTACATCTCCAGCCATTGCACCTCCAACAGAG
ACCATGGCTCCTCCTGTCAGGGATCCTGTTCCAGGGAAGCCCACGGTCACCATTCGGACGCGAGGTGCCA
TTATTCAGACCCCAACTCTGGGCCCTATCCAGCCTACTCGGGTGTCAGAAGCTGGTACCACGGTTCCTGG
CCAGATTCGCCCAACACTGACAATTCCTGGCTATGTAGAGCCCACAGCCGTTATTACTCCTCCAACAACT
ACCACAAAGAAGCCACGAGTGTCCACGCCAAAGCCAGCAACGCCTTCAACTGATTCGTCAACTACCACAA
CTCGGAGGCCAACCAAAAAACCACGGACACCCCGACCAGTGCCCCGAGTCACCACCAAAGCACCCATCAC
CAGGTTGGAGACAGCTTCCCCACCCACTCGAATCCGTACTACCACCAGTGGAGTGCCCCGTGGGGGAGAA
CCTAACCAGCGGCCAGAGCTCAAGAATCACATTGACAGGGTAGATGCCTGGGTGGGAACCTATTTTGAGG
TAAAGATTCCATCAGACACCTTCTATGACAATGAGGATACCACTACCGACAAGCTCAAGCTGACCCTGAA
GCTTCGAGAGCAGCAGTTAGTAGGTGAGAAATCGTGGGTTCAGTTTAACAGCAACAGCCAGCTCATGTAT
GGCCTGCCTGACAGCAGCCATGTGGGAAAACATGAGTATTTTATGCATGCCACAGACAAAGGGGGCCTCT
CCGCTGTGGATGCCTTCGAGATCCATGTTCACAAGCGCCCACAAGGGGACAAGGCTCCTGCACGGTTCAA
GGCCAGGCTTGCAGGGGATCCAGCACCGGTGGTGAATGACATTCACAAGAAAATTGCTTTGGTAAAGAAG
CTAGCTTTTGCTTTTGGGGATCGAAACTGCAGCTCCATCACCCTTCAGAACATCACTCGGGGCTCTATCG
TGGTGGAATGGACCAACAACACTCTGCCCCTGGAGCCCTGCCCCAAGGAGCAGATCATAGGGCTGAGCCG
CAGGATTGCTGATGAAAATGGGAAGCCTCGTCCTGCCTTCTCCAATGCTCTGGAGCCTGACTTTAAGGCT
CTGAGTATTGCTGTGACGGGCTCTGGCAGTTGTCGGCACCTCCAGTTTATCCCTGTGGCACCACCCTCTC
CTGGAAGCTCAGCTGCACCAGCCACAGAGGTTCCAGACAGGGACCCCGAGAAGAGCAGTGAGGACGATGT
TTACCTGCACACCGTTATCCCAGCCGTGGTGGTCGCGGCCATCCTGCTCATTGCTGGAATCATTGCTATG
ATCTGCTATCGCAAGAAGAGGAAGGGCAAGCTGACCCTTGAGGACCAGGCCACCTTTATTAAGAAGGGGG
TGCCTATCATCTTTGCGGATGAGCTGGATGACTCTAAGCCCCCGCCCTCTTCCAGCATGCCGCTCATCTT
GCAGGAAGAGAAGGCTCCCCTCCCACCTCCTGAGTACCCCAACCAGAGTATGCCCGAGACCACTCCTCTG
AACCAGGACACTGTGGGAGAGTACACACCCCTGCGGGATGAGGATCCTAACGCACCTCCCTATCAGCCAC
CCCCACCCTTCACGGCTCCCATGGAGGGCAAGGGCTCCCGTCCCAAGAACATGACCCCATACCGATCACC
CCCTCCGTATGTTCCCCCTTAA

Translation (893 aa):
MSVDNWLLHPLWGQTFLLLLSVAVAQAHWPSEPSEAVRDWKNQLEASMHSVLSDFQEAVPTVVGIPDGTA
VVGRSFRVSIPTDLIASSGEIIKVSAAGKEALPSWLHWDPHSHILEGLPLDTDKGVHYISVSAARLGANG
SHVPQTSSVFSIEVYPEDHNEPQSVRAASSDPGEVVPSACAADEPVTVLTVILDADLTKMTPKQRIDLLN
RMQSFSEVELHNMKLVPVVNNRLFDMSAFMAGPGNAKKVVENGALLSWKLGCSLNQNSVPDIRGVETPAR
EGAMSAQLGYPVVGWHIANKKPTLPKRLRRQIHATPTPVTAIGPPTTAIQEPPSRIVPTPTSPAIAPPTE
TMAPPVRDPVPGKPTVTIRTRGAIIQTPTLGPIQPTRVSEAGTTVPGQIRPTLTIPGYVEPTAVITPPTT
TTKKPRVSTPKPATPSTDSSTTTTRRPTKKPRTPRPVPRVTTKAPITRLETASPPTRIRTTTSGVPRGGE
PNQRPELKNHIDRVDAWVGTYFEVKIPSDTFYDNEDTTTDKLKLTLKLREQQLVGEKSWVQFNSNSQLMY
GLPDSSHVGKHEYFMHATDKGGLSAVDAFEIHVHKRPQGDKAPARFKARLAGDPAPVVNDIHKKIALVKK
LAFAFGDRNCSSITLQNITRGSIVVEWTNNTLPLEPCPKEQIIGLSRRIADENGKPRPAFSNALEPDFKA
LSIAVTGSGSCRHLQFIPVAPPSPGSSAAPATEVPDRDPEKSSEDDVYLHTVIPAVVVAAILLIAGIIAM
ICYRKKRKGKLTLEDQATFIKKGVPIIFADELDDSKPPPSSSMPLILQEEKAPLPPPEYPNQSMPETTPL
NQDTVGEYTPLRDEDPNAPPYQPPPPFTAPMEGKGSRPKNMTPYRSPPPYVPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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