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Report for CCDS5272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5272.1 Public Homo sapiens 6 MAS1 24 110 108 CCDS HistoryNCBI Gene:4142Re-query CCDS DB by CCDS ID:5272.1Re-query CCDS DB by GeneID:4142See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5272.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252660.5 ENSP00000252660.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000252660.5Link to Ensembl Protein Viewer:ENSP00000252660.4Re-query CCDS DB by Nucleotide ID:ENST00000252660Re-query CCDS DB by Protein ID:ENSP00000252660
Original member Current member EBI ENST00000674077.2 ENSP00000501180.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000674077.2Link to Ensembl Protein Viewer:ENSP00000501180.2Re-query CCDS DB by Nucleotide ID:ENST00000674077Re-query CCDS DB by Protein ID:ENSP00000501180
Original member Current member NCBI NM_001366704.2 NP_001353633.1 Accepted alive Link to Nucleotide Sequence:NM_001366704.2Link to Protein Sequence:NP_001353633.1Re-query CCDS DB by Nucleotide ID:NM_001366704Re-query CCDS DB by Protein ID:NP_001353633Link to BLAST:NP_001353633.1
Original member Current member NCBI NM_002377.4 NP_002368.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002377.4Link to Protein Sequence:NP_002368.1Re-query CCDS DB by Nucleotide ID:NM_002377Re-query CCDS DB by Protein ID:NP_002368Link to BLAST:NP_002368.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001353633.1 325 P04201 325 100% 0 0
NP_002368.1 325 P04201 325 100% 0 0

Chromosomal Locations for CCDS 5272.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 159906956 159907933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGATGGGTCAAACGTGACATCATTTGTTGTTGAGGAACCCACGAACATCTCAACTGGCAGGAACGCCT
CAGTCGGGAATGCACATCGGCAAATCCCCATCGTGCACTGGGTCATTATGAGCATCTCCCCAGTGGGGTT
TGTTGAGAATGGGATTCTCCTCTGGTTCCTGTGCTTCCGGATGAGAAGAAATCCCTTCACTGTCTACATC
ACCCACCTGTCTATCGCAGACATCTCACTGCTCTTCTGTATTTTCATCTTGTCTATCGACTATGCTTTAG
ATTATGAGCTTTCTTCTGGCCATTACTACACAATTGTCACATTATCAGTGACTTTTCTGTTTGGCTACAA
CACGGGCCTCTATCTGCTGACGGCCATTAGTGTGGAGAGGTGCCTGTCAGTCCTTTACCCCATCTGGTAC
CGATGCCATCGCCCCAAGTACCAGTCGGCATTGGTCTGTGCCCTTCTGTGGGCTCTTTCTTGCTTGGTGA
CCACCATGGAGTATGTCATGTGCATCGACAGAGAAGAAGAGAGTCACTCTCGGAATGACTGCCGAGCAGT
CATCATCTTTATAGCCATCCTGAGCTTCCTGGTCTTCACGCCCCTCATGCTGGTGTCCAGCACCATCTTG
GTCGTGAAGATCCGGAAGAACACGTGGGCTTCCCATTCCTCCAAGCTTTACATAGTCATCATGGTCACCA
TCATTATATTCCTCATCTTCGCTATGCCCATGAGACTCCTTTACCTGCTGTACTATGAGTATTGGTCGAC
CTTTGGGAACCTACACCACATTTCCCTGCTCTTCTCCACAATCAACAGTAGCGCCAACCCTTTCATTTAC
TTCTTTGTGGGAAGCAGTAAGAAGAAGAGATTCAAGGAGTCCTTAAAAGTTGTTCTGACCAGGGCTTTCA
AAGATGAAATGCAACCTCGGCGCCAGAAAGACAATTGTAATACGGTCACAGTTGAGACTGTCGTCTAA

Translation (325 aa):
MDGSNVTSFVVEEPTNISTGRNASVGNAHRQIPIVHWVIMSISPVGFVENGILLWFLCFRMRRNPFTVYI
THLSIADISLLFCIFILSIDYALDYELSSGHYYTIVTLSVTFLFGYNTGLYLLTAISVERCLSVLYPIWY
RCHRPKYQSALVCALLWALSCLVTTMEYVMCIDREEESHSRNDCRAVIIFIAILSFLVFTPLMLVSSTIL
VVKIRKNTWASHSSKLYIVIMVTIIIFLIFAMPMRLLYLLYYEYWSTFGNLHHISLLFSTINSSANPFIY
FFVGSSKKKRFKESLKVVLTRAFKDEMQPRRQKDNCNTVTVETVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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