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Report for CCDS6243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6243.1 Public Homo sapiens 8 CPNE3 24 110 108 CCDS HistoryNCBI Gene:8895Re-query CCDS DB by CCDS ID:6243.1Re-query CCDS DB by GeneID:8895See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6243.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000517490.6 ENSP00000477590.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000517490.6Link to Ensembl Protein Viewer:ENSP00000477590.1Re-query CCDS DB by Nucleotide ID:ENST00000517490Re-query CCDS DB by Protein ID:ENSP00000477590
Original member Current member NCBI NM_003909.5 NP_003900.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003909.5Link to Protein Sequence:NP_003900.1Re-query CCDS DB by Nucleotide ID:NM_003909Re-query CCDS DB by Protein ID:NP_003900Link to BLAST:NP_003900.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003900.1 537 O75131 537 100% 0 0

Chromosomal Locations for CCDS 6243.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 86528546 86528677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86528945 86529124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86531155 86531229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86532509 86532580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86537563 86537646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86540245 86540334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86544740 86544838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86546595 86546681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86547711 86547770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86548301 86548434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86551046 86551100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86551183 86551234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86554851 86554984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86556102 86556338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 86558288 86558410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGGCTGCCCAGTGTGTCACAAAGGTGGCGCTGAATGTTTCCTGTGCCAATCTTTTGGATAAAGATATAG
GGTCAAAGTCAGACCCTTTATGTGTGTTGTTTTTGAATACAAGTGGTCAACAGTGGTATGAGGTTGAGCG
CACAGAAAGGATTAAGAATTGCTTGAATCCCCAATTTTCCAAGACATTTATTATTGATTACTACTTTGAA
GTGGTTCAGAAATTGAAATTTGGGGTTTATGACATCGACAACAAAACTATTGAGCTGAGTGATGATGACT
TCTTAGGGGAATGTGAATGTACCCTTGGACAAATTGTTTCCAGCAAGAAGCTAACTCGACCACTGGTGAT
GAAAACTGGCAGACCTGCAGGAAAAGGGAGCATTACGATTTCAGCTGAAGAAATAAAAGATAATAGAGTG
GTCTTGTTTGAAATGGAAGCCAGAAAACTGGATAATAAGGATCTATTTGGAAAGTCAGACCCATACCTGG
AATTCCACAAGCAGACATCTGATGGAAACTGGCTAATGGTTCATCGGACAGAGGTTGTTAAAAACAACTT
GAATCCTGTTTGGAGGCCTTTCAAGATCTCTCTTAACTCACTGTGTTACGGAGATATGGACAAAACCATT
AAGGTGGAGTGTTATGATTATGACAATGATGGGTCACATGATCTCATTGGAACATTTCAGACCACCATGA
CAAAACTGAAAGAAGCCTCCAGAAGCTCACCTGTTGAATTTGAATGCATAAATGAGAAAAAAAGGCAAAA
GAAAAAAAGCTACAAGAATTCAGGTGTTATCAGTGTGAAACAGTGTGAGATTACAGTAGAATGCACATTC
CTTGACTATATAATGGGAGGATGTCAGCTGAATTTTACTGTGGGAGTGGACTTCACTGGCTCCAATGGTG
ACCCAAGGTCTCCAGACTCCCTTCATTACATCAGCCCCAATGGCGTTAATGAGTATTTGACTGCTCTCTG
GTCTGTGGGACTGGTCATTCAAGATTATGATGCTGATAAGATGTTTCCAGCTTTTGGTTTTGGCGCTCAG
ATACCTCCTCAGTGGCAGGTATCACATGAATTTCCAATGAACTTCAACCCATCCAATCCCTACTGCAATG
GAATCCAAGGCATTGTAGAGGCGTATCGGTCTTGTCTTCCTCAGATAAAACTCTATGGACCAACTAATTT
TTCTCCAATCATAAATCACGTGGCCAGGTTTGCTGCTGCAGCCACGCAACAGCAGACAGCTTCTCAATAT
TTTGTGCTTTTGATTATTACTGATGGTGTGATCACAGACCTTGATGAAACCAGACAAGCTATAGTTAATG
CCTCCAGGCTGCCTATGTCCATCATAATTGTTGGAGTTGGAGGTGCTGACTTCAGCGCCATGGAGTTTCT
GGATGGTGATGGTGGAAGTCTCCGCTCCCCATTGGGCGAAGTGGCCATCAGAGATATTGTCCAGTTTGTG
CCTTTCAGACAGTTCCAGAATGCTCCAAAAGAAGCACTTGCTCAGTGTGTCTTGGCAGAGATTCCCCAGC
AGGTGGTGGGCTACTTCAATACATACAAACTCCTTCCTCCCAAGAACCCAGCCACGAAACAACAGAAGCA
GTGA

Translation (537 aa):
MAAQCVTKVALNVSCANLLDKDIGSKSDPLCVLFLNTSGQQWYEVERTERIKNCLNPQFSKTFIIDYYFE
VVQKLKFGVYDIDNKTIELSDDDFLGECECTLGQIVSSKKLTRPLVMKTGRPAGKGSITISAEEIKDNRV
VLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGNWLMVHRTEVVKNNLNPVWRPFKISLNSLCYGDMDKTI
KVECYDYDNDGSHDLIGTFQTTMTKLKEASRSSPVEFECINEKKRQKKKSYKNSGVISVKQCEITVECTF
LDYIMGGCQLNFTVGVDFTGSNGDPRSPDSLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQ
IPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPIINHVARFAAAATQQQTASQY
FVLLIITDGVITDLDETRQAIVNASRLPMSIIIVGVGGADFSAMEFLDGDGGSLRSPLGEVAIRDIVQFV
PFRQFQNAPKEALAQCVLAEIPQQVVGYFNTYKLLPPKNPATKQQKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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