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Report for CCDS50535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50535.1 Public Mus musculus 2 Lcn6 23 108 98 CCDS HistoryNCBI Gene:620709Re-query CCDS DB by CCDS ID:50535.1Re-query CCDS DB by GeneID:620709See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50535.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114199.7 ENSMUSP00000109837.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114199.7Link to Ensembl Protein Viewer:ENSMUSP00000109837.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114199Re-query CCDS DB by Protein ID:ENSMUSP00000109837
Original member Current member NCBI NM_177840.4 NP_808508.2 Accepted alive Link to Nucleotide Sequence:NM_177840.4Link to Protein Sequence:NP_808508.2Re-query CCDS DB by Nucleotide ID:NM_177840Re-query CCDS DB by Protein ID:NP_808508Link to BLAST:NP_808508.2

Chromosomal Locations for CCDS 50535.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25676816 25676908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25677082 25677221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25680057 25680127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25680706 25680816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25680936 25681037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25681251 25681276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25681453 25681455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGAAGGTGATCCTTCTGACTGCTGCTCTTCTTGCTTTGGTCTCTATTCCCTGGTTGCAGGCAGTGTGGC
TGGGAAGGCTGGACCCTAAGCAGCTCCTCGGTCCCTGGTATGTCCTGGCTGTGGCCTCCCGTGCAAAGGA
CTTCATGGTGGAGAAGGACATGAAGAATGTGGAAGGTGTCGTGGTGACTCTTACTCCAGATAACAAATTG
AGAGTTGAGTCCTCTCGGCATGGGCCAGGCGGATGTCATCAGAGCACCGTGGAGCTGCTGAAGCAAGAGT
CCCGATGGGTGTTTGAGAATCCCTCTCTGGGTATATTGGATTATCGGGTACTGGGCACTAACTTCAAAGA
CTACGCTGTCGTCTTCACACAGCTGGAATTTGGGGATGAGGTCTTCAACACAGTGTCGTTGTACAGTCGG
ACAGAGATGGCTAGCCACGAAGCCATGCAGCTATTCACCAAATGGAGCCAGGGGCTGGGCTTCTTGTCTC
AACAGCAGGCTCAGCTGCAGAAGGACCTCACTTGTGCACACAAGATCCTCCAGTGA

Translation (181 aa):
MKVILLTAALLALVSIPWLQAVWLGRLDPKQLLGPWYVLAVASRAKDFMVEKDMKNVEGVVVTLTPDNKL
RVESSRHGPGGCHQSTVELLKQESRWVFENPSLGILDYRVLGTNFKDYAVVFTQLEFGDEVFNTVSLYSR
TEMASHEAMQLFTKWSQGLGFLSQQQAQLQKDLTCAHKILQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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