NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46414.1 Public Homo sapiens 2 POTEE 24 110 108 CCDS HistoryNCBI Gene:445582Re-query CCDS DB by CCDS ID:46414.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46414.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356920.9 ENSP00000439189.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356920.9Link to Ensembl Protein Viewer:ENSP00000439189.1Re-query CCDS DB by Nucleotide ID:ENST00000356920Re-query CCDS DB by Protein ID:ENSP00000439189
Original member Current member EBI ENST00000683005.1 ENSP00000507284.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683005.1Link to Ensembl Protein Viewer:ENSP00000507284.1Re-query CCDS DB by Nucleotide ID:ENST00000683005Re-query CCDS DB by Protein ID:ENSP00000507284
Original member Current member NCBI NM_001083538.3 NP_001077007.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001083538.3Link to Protein Sequence:NP_001077007.1Re-query CCDS DB by Nucleotide ID:NM_001083538Re-query CCDS DB by Protein ID:NP_001077007Link to BLAST:NP_001077007.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077007.1 1075 Q6S8J3-1 1075 100% 0 0

Chromosomal Locations for CCDS 46414.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 131218403 131218923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131223596 131223710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131223870 131224043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131226823 131226929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131228244 131228381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131230836 131230906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131236732 131236802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131238194 131238238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131239278 131239444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131245407 131245477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131250778 131250848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131252526 131252570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131252918 131253099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131261726 131261846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131263355 131264683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3228 nt):
ATGGTGGTTGAGGTTGATTCCATGCCGGCTGCCTCTTCTGTGAAGAAGCCATTTGGTCTCAGGAGCAAGA
TGGGCAAGTGGTGCTGCCGTTGCTTCCCCTGCTACAGGGAGAGCGGCAAGAGCAACGTGGGCACTTCTGG
AGACCACGACGACTCTGCTATGAAGACACTCAGGAGCAAGATGGGCAAGTGGTGCCACCACTGCTTCCCC
TGCTGCAGGGGGAGTGGCAAGAGCAACGTGGGCGCTTCTGGAGACCACGACGACTCTGCTATGAAGACAC
TCAGGAACAAGATGGGGAAGTGGTGCTGCCACTGCTTCCCCTGCTGCAGGGGGAGCGGCAAGAGCAAGGT
GGGCGCTTGGGGAGACTACGATGACAGCGCCTTCATGGAGCCCAGGTACCACGTCCGTGGAGAAGATCTG
GACAAGCTCCACAGAGCTGCCTGGTGGGGTAAAGTCCCCAGAAAGGATCTCATCGTCATGCTCAGGGACA
CTGACGTGAACAAGAAGGACAAGCAAAAGAGGACTGCTCTACATCTGGCCTCTGCCAATGGGAATTCAGA
AGTAGTAAAACTCCTGCTGGACAGACGATGTCAACTTAATGTCCTTGACAACAAAAAGAGGACAGCTCTG
ATAAAGGCCGTACAATGCCAGGAAGATGAATGTGCGTTAATGTTGCTGGAACATGGCACTGATCCAAATA
TTCCAGATGAGTATGGAAATACCACTCTGCACTACGCTATCTATAATGAAGATAAATTAATGGCCAAAGC
ACTGCTCTTATATGGTGCTGATATCGAATCAAAAAACAAGCATGGCCTCACACCACTGTTACTTGGTGTA
CATGAGCAAAAACAGCAAGTCGTGAAATTTTTAATCAAGAAAAAAGCGAATTTAAATGCACTGGATAGAT
ATGGAAGGACTGCTCTCATACTTGCTGTATGTTGTGGATCAGCAAGTATAGTCAGCCTTCTACTTGAGCA
AAATATTGATGTATCTTCTCAAGATCTATCTGGACAGACGGCCAGAGAGTATGCTGTTTCTAGTCATCAT
CATGTAATTTGCCAGTTACTTTCTGACTACAAAGAAAAACAGATGCTAAAAATCTCTTCTGAAAACAGCA
ATCCAGAACAAGAGTTAAAGCTGACATCAGAGGAAGAGTCACAAAGGTTCAAAGGCAGTGAAAATAGCCA
GCCAGAGAAAATGTCTCAAGAACTAGAAATAAATAAGGATGGTGATAGAGAGGTTGAAGAAGAAATGAAG
AAGCATGAAAGTAATAATGTGGGATTACTAGAAAACCTGACTAATGGTGTCACTGCTGGCAATGGTGATA
ATGGATTAATTCCTCAAAGGAAGAGCAGAACACCTGAAAATCAGCAATTTCCTGACAACGAAAGTGAAGA
GTATCACAGAATTTGTGAATTACTTTCTGACTACAAAGAAAAGCAGATGCCAAAATACTCTTCTGAAAAC
AGCAACCCAGAACAAGACTTAAAGCTGACATCAGAGGAAGAGTCACAAAGGCTTAAAGGCAGTGAAAATG
GCCAGCCAGAGAAAAGATCTCAAGAACCAGAAATAAATAAGGATGGTGATAGAGAGCTAGAAAATTTTAT
GGCTATCGAAGAAATGAAGAAGCACGGAAGTACTCATGTCGGATTCCCAGAAAACCTGACTAATGGTGCC
ACTGCTGGCAATGGTGATGATGGATTAATTCCTCCAAGGAAGAGCAGAACACCTGAAAGCCAGCAATTTC
CTGACACTGAGAATGAAGAGTATCACAGTGACGAACAAAATGATACTCAGAAGCAATTTTGTGAAGAACA
GAACACTGGAATATTACACGATGAGATTCTGATTCATGAAGAAAAGCAGATAGAAGTGGTTGAAAAAATG
AATTCTGAGCTTTCTCTTAGTTGTAAGAAAGAAAAAGACGTCTTGCATGAAAATAGTACGTTGCGGGAAG
AAATTGCCATGCTAAGACTGGAGCTAGACACAATGAAACATCAGAGCCAGCTAAGAGAAAAGAAATATTT
GGAGGATATTGAAAGTGTGAAAAAAAAGAATGATAATCTTTTAAAGGCTCTACAATTGAATGAGCTCACC
ATGGATGATGATACCGCCGTGCTCGTCATTGACAACGGCTCTGGCATGTGCAAGGCCGGCTTTGCGGGCG
ACGATGCCCCCCGGGCTGTCTTCCCTTCCATCGTGGGGCGCCCCAGGCAGCAGGGCATGATGGGGGGCAT
GCATCAGAAAGAGTCCTATGTGGGCAAGGAGGCCCAGAGCAAGAGAGGCATCCTGACCCTGAAGTACCCC
ATGGAACACGGCATCATCACCAACTGGGATGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGC
TGCGTGTGGCTCCCGAGGAGCACCCCATCCTGCTGACCGAGGCCCCCCTGAACCCCAAGGCCAACCGCGA
GAAGATGACCCAGATCATGTTTGAGACCTTCAACACCCCAGCCATGTACGTGGCCATCCAGGCCGTGCCG
TCCCTGTACACCTCTGGCCGTACTACTGGCATCGTGATGGACTCTGGTGACGGGGTCACCCACACTGTGC
CCATCTATGAGGGGAATGCCCTCCCCCATGCCACCCTGCGCCTAGACCTGGCTGGGCGGGAACTGCCTGA
CTACCTCATGAAGATCCTCACCGAGCGTGGCTATAGGTTCACCACCATGGCCGAGCGGGAAATCGTGCGT
GACATCAAAGAGAAGCTGTGCTATGTTGCCCTGGACTTCGAGCAGGAGATGGCCACGGCGGCCTCCAGCT
CCTCCCTAGAGAAGAGCTACGAGCTGCCCGATGGCCAGGTCATCACCATCGGCAACGAGCGGTTCCGCTG
CCCCGAGGCGCTCTTCCAGCCTTGCTTCCTGGGCATGGAATCCTGTGGCATCCATGAAACTACCTTCAAC
TCCATCATGAAGTCTGATGTGGACATCCGCAAAGACCTGTACACCAACACAGTGCTGTCTGGCGGCACCA
CCATGTACCCTGGCATGGCCCACAGAATGCAGAAGGAGATCGCTGCCCTGGCGCCTAGCATGATGAAGAT
CAGGATCATTGCTCCTCCCAAGCGCAAGTACTCCGTGTGGGTCGGTGGCTCCATCCTGGCCTCGCTGTCC
ACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGATGAGTCAGGCCCCTCCATTGTCCACCGCAAAT
GCTTCTAG

Translation (1075 aa):
MVVEVDSMPAASSVKKPFGLRSKMGKWCCRCFPCYRESGKSNVGTSGDHDDSAMKTLRSKMGKWCHHCFP
CCRGSGKSNVGASGDHDDSAMKTLRNKMGKWCCHCFPCCRGSGKSKVGAWGDYDDSAFMEPRYHVRGEDL
DKLHRAAWWGKVPRKDLIVMLRDTDVNKKDKQKRTALHLASANGNSEVVKLLLDRRCQLNVLDNKKRTAL
IKAVQCQEDECALMLLEHGTDPNIPDEYGNTTLHYAIYNEDKLMAKALLLYGADIESKNKHGLTPLLLGV
HEQKQQVVKFLIKKKANLNALDRYGRTALILAVCCGSASIVSLLLEQNIDVSSQDLSGQTAREYAVSSHH
HVICQLLSDYKEKQMLKISSENSNPEQELKLTSEEESQRFKGSENSQPEKMSQELEINKDGDREVEEEMK
KHESNNVGLLENLTNGVTAGNGDNGLIPQRKSRTPENQQFPDNESEEYHRICELLSDYKEKQMPKYSSEN
SNPEQDLKLTSEEESQRLKGSENGQPEKRSQEPEINKDGDRELENFMAIEEMKKHGSTHVGFPENLTNGA
TAGNGDDGLIPPRKSRTPESQQFPDTENEEYHSDEQNDTQKQFCEEQNTGILHDEILIHEEKQIEVVEKM
NSELSLSCKKEKDVLHENSTLREEIAMLRLELDTMKHQSQLREKKYLEDIESVKKKNDNLLKALQLNELT
MDDDTAVLVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRQQGMMGGMHQKESYVGKEAQSKRGILTLKYP
MEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVP
SLYTSGRTTGIVMDSGDGVTHTVPIYEGNALPHATLRLDLAGRELPDYLMKILTERGYRFTTMAEREIVR
DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPCFLGMESCGIHETTFN
SIMKSDVDIRKDLYTNTVLSGGTTMYPGMAHRMQKEIAALAPSMMKIRIIAPPKRKYSVWVGGSILASLS
TFQQMWISKQEYDESGPSIVHRKCF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH