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Report for CCDS17713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17713.1 Public Mus musculus 3 I830077J02Rik 23 108 98 CCDS HistoryNCBI Gene:433638Re-query CCDS DB by CCDS ID:17713.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17713.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098758.3 ENSMUSP00000096354.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098758.3Link to Ensembl Protein Viewer:ENSMUSP00000096354.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098758Re-query CCDS DB by Protein ID:ENSMUSP00000096354
Original member Current member NCBI NM_001033780.3 NP_001028952.1 Accepted alive Link to Nucleotide Sequence:NM_001033780.3Link to Protein Sequence:NP_001028952.1Re-query CCDS DB by Nucleotide ID:NM_001033780Re-query CCDS DB by Protein ID:NP_001028952Link to BLAST:NP_001028952.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028952.1 132 Q3U7U4 132 100% 0 0

Chromosomal Locations for CCDS 17713.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 105926440 105926598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105926868 105926917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105927147 105927241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105927965 105928022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 105928734 105928770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGGGATCTACTTCCTCCACACCTAAATCCACAATCTGCACATTCTCCACGACAGCCCCAGTGACCAGCT
CTACACCCTATTTCTTCAACCCCAAAAAGGAACACATCATCTTGGCCTTTTTTGCTGGGGTTCTGCTGAC
ACTGCTCATTGTGGCCCTTATCTTCCTCATTGTCAAGAGCTGCAGAAAATGTCACTCCAGTGCCCAGACC
CAGGACCCTCCCTCAGAGCCTCCCACCAAACTGTCGTCTTTATCAAAGGAGTCACTCACGTATGCCAGCA
TGACTTTCAAGCCCCCAGAAGAAAACAGCAATGACTTGACTAGAAACCACTCCTCAGGCTTGGAGCCCAC
TATCTATTCCCAGATTAAAGTGACAGACTCAGATCTGCCTCTCCCATGA

Translation (132 aa):
MGSTSSTPKSTICTFSTTAPVTSSTPYFFNPKKEHIILAFFAGVLLTLLIVALIFLIVKSCRKCHSSAQT
QDPPSEPPTKLSSLSKESLTYASMTFKPPEENSNDLTRNHSSGLEPTIYSQIKVTDSDLPLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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