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Report for CCDS17342.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17342.2 Public Mus musculus 3 Maml3 23 108 98 CCDS HistoryNCBI Gene:433586Re-query CCDS DB by CCDS ID:17342.2See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 17342.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data. The update adds a MamL-1 domain to the protein.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17342.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121440.3 ENSMUSP00000112637.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121440.3Link to Ensembl Protein Viewer:ENSMUSP00000112637.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121440Re-query CCDS DB by Protein ID:ENSMUSP00000112637
Original member NCBI NM_001004176.2 NP_001004176.2 Updated not alive Link to Nucleotide Sequence:NM_001004176.2Link to Protein Sequence:NP_001004176.2Re-query CCDS DB by Nucleotide ID:NM_001004176Re-query CCDS DB by Protein ID:NP_001004176
Current member NCBI NM_001004176.3 NP_001004176.2 Accepted alive Link to Nucleotide Sequence:NM_001004176.3Link to Protein Sequence:NP_001004176.2Re-query CCDS DB by Nucleotide ID:NM_001004176Re-query CCDS DB by Protein ID:NP_001004176Link to BLAST:NP_001004176.2

Chromosomal Locations for CCDS 17342.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51689854 51690854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51692196 51692280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51697565 51697843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51855499 51857076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52103679 52104143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3408 nt):
ATGGGGGATTTCGCAGCCCCCGCTGCCGCCGCGAATGGTAGTAGTATCTGCATCAACAGCAGCCTGAGCA
GCAGCCTCGGCGGGGCCGGGATCGGCGTGAATACTCCCAATAGCACTCCGGTTGCTCCGAGTGGCAATCA
CCCCGCTGCCGGCGGCTGCGGCGGCTCCGGGGGCCCCGGCGGCAGCTCGGCGGCCGTCCCCAAGCACAGC
ACGGTAGTCGAGCGGCTCCGCCAGCGCATCGAGGGCTGCCGGCGGCACCACGTCAACTGCGAGAACAGGT
ATCAGCAGGCTCAGGTGGAGCAGCTGGAGCTGGAGCGCCGGGACACCGTGAGCCTCTATCAGAGGACCCT
GGAGCAGAGAGCCAAGAAATCGGGCGCCGGCAGCGGCAAGCAGCAGCACCCGAGTAAAACCCAGCAAGAT
GCGGAGGCTGCCTCAGCCGAGCAGAGGAACCATACGCTGATCATGCTGCAAGAGACTGTGAAGAGGAAGT
TGGAAGGGGCCCGATCGCCACTAAATGGGGACCAGCAGAATGGCGCTTGCGACGGGAGCTTCTCTCCCAC
AAGCAAGCGCATCCGAAAGGATCTTGGCACGGGGCTGGAAGCCATCAACAATTTGCCCAACAACATGCCC
CTGACGTCAGCATCTCCCCTTCACCAACTTGACCTCAAGCCTTCTTTGCCCTTGCAGAACAGCGCTGCTC
ACACCCCTGGGCTTCTGGAAGATCTGAGTAAGAACGGCAGGCTCCCTGTCAATGGCTGTGGGGATCTGGA
GGATAGCTTTGCTATCTTACAGAACAAGGACCTCAAACAGGAGCCTCTTGACGACCCTGCCTGCATAGAC
ACATCGGAGACGTCCCTTTCTAATCAGAACAAGCTGTTCTCTGACATTAACCTGAATGACCAAGAGTGGC
AAGAACTAATAGACGAACTGGCCAACACGGTTCCGGAAGACGACATCCAGGACCTGTTCAATGAAGACTT
TGAAGAGAAGAAGGAGCAGGAGTTCTCACAGACAACCATGGAGACGCCACTCTCCCAGGAGAGCGTGAGT
GTGAAGAGCGATGCCTCTCACTCTCCTTTTGCACACGTCTCTCTGGGATCGCCTCAGGCCAGACCCTCAT
CTTCTGGTCCTCCCTTTTCCACTGTCTCCACAGGCACTAACTTGCCATCCGTGGCCAACACTCCCGGGGC
TCAAAACCCTGCCAGCTCGCCAGCTAACTGTGCTGTCCAGTCCCCCCAGACTCCAACCCAAGCCCACACC
CCAGGTCAAGCCCCACCTAGGCCTGGCAATGGCTATCTCCTTAATCCAGTCTCTGTGGCAGTATCTGGTT
CAGGGTCAGGCTCTGTGGCAGGGCCCAGCTCTGACATGTCCCCAGCAGAGCAGCTCAAACAGATGGCTGC
CCAGCAACAACAGAGGGCAAAACTCATGCAGCAGAAGCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAG
CAGCAACAACAACAACAACAGCAGCACTCAAATCAGACTTCAAGTTGGTCTCCCTTAGGGCCTCCGTCAA
GTCCATATGGAACAGCTTTTGCTTCAGAAAAACCAAATAGCCCAATGATGTACCCCCAAGCCTTTAACAA
CCAAAACACTATAGTGCCTGCAATGGCAAACAGCCTGCAGAAGACGACCATGAACAACTACCTCCCTTCC
AATCACATGAATATGATCAGTCAGCAGCCAAATAACTTGGGTACAAACTCCTTAAACAAACAGCACAATA
TTCTCACCTATGGCAACACTAAGCCTCTGACCCATTTTAATGCGGACTTGAGTCCGAGAATGACGCCCCC
TATGGCCAACCCCAACAAAACCCCCTTGATGCCCTACATCCAGCAGCCTCAGCAGTCGCAGCAGCCCCAG
CCGCAGCCGCCCCAGCAGCAGCCACCGCCTCCCCCGCAGCTGCAGGCTCCCAGGGCGCACCTGAGCGAGG
ACCAGAAACGCATGCTTCTCATTAAGCAGAAAGGAGTGATGAACCCACCCATGGCCTATGCTGCGCTTCC
TGCCCACGGTCAGGAGCAGCACGCAGTCGGTATTCCCCGGACCACAGGCCCTATGCAGAACTCTGTGCCC
TCGGGGTCGGGCAGCATGGTCTCCGGAGCCAGTCCTGGGGGCCTTGGATTTCTAGGCAGCCAGCCACAGG
CAGCCATCATGAAGCAGATGCTAATGGACCAACGGGCCCAGCTGATGGAGCACCAGAAGCAACAGTTCCT
TCGGGAGCAGAGGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGATC
CTGGCTGAGCAGCAGTTACAGCAGCCGCACCTGCCCCGTCAGCACCTCCAGCAACAGCGGAACCCATACC
CAGTGCAGCAGGTCAACCAGTTTCAAGGTTCACCCCAGGACATAGCAGCTGTGAGAAACCAGGTGGCTCT
CCAGAGCATGCGAGCATCGAGGTTGATTGCACAGAATGCGGGCATGATGGGAATGGGACCCTCCCAGAAC
CCAGGGACGATGGCTACGGCAGCAGCGCAGTCAGAGATAGGTCTGGCCTCTTACAGTGCCCCTCCAACCA
GCCAACCAGGAATGTACAACATGAACACAGGAATGACCCAAATGTTGCAGCATTCCAATCAGAGTGGAAT
GGGCATCCCACACAACCAATCCCAGGGACCCAGGCCGCCAGCCTCCAGCCAGGGGGTCGGCATGGTGAGC
GGCTTCGGTCAGAGCATGCTGGTGAACTCGGCTCTCTCGCAGCAGCACCAGCAGCTGAAAGGGTCTGTGG
GCCAGGCCTTGCCTAGGCCCCAGGGCCCTCCAAGGCTTCAGAGTGTCATGGGAACCGTCCAGCAAGGAGC
ACAAAACTGGCAACAGAGGAGCTTACAAGGGGTGCCTGGGAGGACTAGTGGGGAGTTGGGACCATTCAAC
AATGGCGCCAGCTACCCATTGCAAGCCGGTCAGCCAAGACTGACCAAACAGCACTTCCCACAGGGGCTGA
GCCAGCCCGTCATGGATGCTAACACTGGCGCAGTGAGAACCCTCAACCCAGCAGCTATGGGACGTCAGAT
GATGCCAACCCTGGCAGGACAGCAGAGTGCCAGCCAGGTGAGGCCATTGGTCATGCCTGGTCTGAGCCAG
GGTGTCCCTGGCATGCCAGCATTCAGCCAGCCCCCAGCACAGCAGCAGATAGCAGGTGGCAACTTTGCTG
CGAGCAACCAGGGCCAGGCCTATGAGCGGACCCCTGCTCAGGACATGTCATACAGTTATAGCGGCGAAGG
TGTCGGGGCTGCCTTCCCTGGCCTCCCAGACAGTACAGACCTCGTGGACTCCATCATCAAAAGTGGCCCA
GGGGATGAATGGATGCAAGAGCTTGATGAACTGTTTGGTAACCCCTAG

Translation (1135 aa):
MGDFAAPAAAANGSSICINSSLSSSLGGAGIGVNTPNSTPVAPSGNHPAAGGCGGSGGPGGSSAAVPKHS
TVVERLRQRIEGCRRHHVNCENRYQQAQVEQLELERRDTVSLYQRTLEQRAKKSGAGSGKQQHPSKTQQD
AEAASAEQRNHTLIMLQETVKRKLEGARSPLNGDQQNGACDGSFSPTSKRIRKDLGTGLEAINNLPNNMP
LTSASPLHQLDLKPSLPLQNSAAHTPGLLEDLSKNGRLPVNGCGDLEDSFAILQNKDLKQEPLDDPACID
TSETSLSNQNKLFSDINLNDQEWQELIDELANTVPEDDIQDLFNEDFEEKKEQEFSQTTMETPLSQESVS
VKSDASHSPFAHVSLGSPQARPSSSGPPFSTVSTGTNLPSVANTPGAQNPASSPANCAVQSPQTPTQAHT
PGQAPPRPGNGYLLNPVSVAVSGSGSGSVAGPSSDMSPAEQLKQMAAQQQQRAKLMQQKQQQQQQQQQQQ
QQQQQQQQHSNQTSSWSPLGPPSSPYGTAFASEKPNSPMMYPQAFNNQNTIVPAMANSLQKTTMNNYLPS
NHMNMISQQPNNLGTNSLNKQHNILTYGNTKPLTHFNADLSPRMTPPMANPNKTPLMPYIQQPQQSQQPQ
PQPPQQQPPPPPQLQAPRAHLSEDQKRMLLIKQKGVMNPPMAYAALPAHGQEQHAVGIPRTTGPMQNSVP
SGSGSMVSGASPGGLGFLGSQPQAAIMKQMLMDQRAQLMEHQKQQFLREQRQQQQQQQQQQQQQQQQQQI
LAEQQLQQPHLPRQHLQQQRNPYPVQQVNQFQGSPQDIAAVRNQVALQSMRASRLIAQNAGMMGMGPSQN
PGTMATAAAQSEIGLASYSAPPTSQPGMYNMNTGMTQMLQHSNQSGMGIPHNQSQGPRPPASSQGVGMVS
GFGQSMLVNSALSQQHQQLKGSVGQALPRPQGPPRLQSVMGTVQQGAQNWQQRSLQGVPGRTSGELGPFN
NGASYPLQAGQPRLTKQHFPQGLSQPVMDANTGAVRTLNPAAMGRQMMPTLAGQQSASQVRPLVMPGLSQ
GVPGMPAFSQPPAQQQIAGGNFAASNQGQAYERTPAQDMSYSYSGEGVGAAFPGLPDSTDLVDSIIKSGP
GDEWMQELDELFGNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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