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Report for CCDS88421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88421.1 Public Mus musculus 13 Vmn1r207 23 108 98 CCDS HistoryNCBI Gene:432735Re-query CCDS DB by CCDS ID:88421.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 88421.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000237024.1 ENSMUSP00000157896.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237024.1Link to Ensembl Protein Viewer:ENSMUSP00000157896.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237024Re-query CCDS DB by Protein ID:ENSMUSP00000157896
Original member Current member EBI ENSMUST00000236800.1 ENSMUSP00000157931.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236800.1Link to Ensembl Protein Viewer:ENSMUSP00000157931.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236800Re-query CCDS DB by Protein ID:ENSMUSP00000157931
Original member Current member EBI ENSMUST00000119931.2 ENSMUSP00000158190.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119931.2Link to Ensembl Protein Viewer:ENSMUSP00000158190.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119931Re-query CCDS DB by Protein ID:ENSMUSP00000158190
Original member Current member NCBI NM_001166709.1 NP_001160181.1 Accepted alive Link to Nucleotide Sequence:NM_001166709.1Link to Protein Sequence:NP_001160181.1Re-query CCDS DB by Nucleotide ID:NM_001166709Re-query CCDS DB by Protein ID:NP_001160181Link to BLAST:NP_001160181.1

Chromosomal Locations for CCDS 88421.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 22725684 22726622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGATTTAAAATATATTAAAGAAATTATTTTCATCTTTATAACTGTGGTTGGCACTCTGGGGAACATGT
CTGTTTCTGTAAATTATATGTTCAGTTGGTGGGGAAACCCTGAAAAGAAATCTGTACACCTTATTCTCAT
CCACTTGGCTTTTACAAACATCATAATCCTTCTTACAAAAGGACTGCCAAAGACAGTAGCAGTTTTTGGT
TTGAGAAACTTCCCAGATGCCATAGGTTGTAAGATCATTGTTTACCTGGGGAGGGTGGCCCGTGGCCTCT
CCATCTGCACCAGCAGTCTCCTCACTGTGGTCCAGGCCATCATCATCAGTCCCAGAGCATCTAGGTGGAG
CAGACTAAGGCCAAGGTCTGCATGGCACATCCTTTTATTCTTCCTATACTTTTGGATACTCAATGCTTTA
ATAAGTATGAACTTAATCCATGCCATCACAAGTACAGATCTGAATATATCACAGCTTAAGAATAGTAACA
ACTACTGCTATTTTATGCTAGAAAATCAAGAAGTAAAATGGATATTTCTCACTCTCATGGTTCTCAGAGA
TGCAGTGTTTCAGGGTGCCATGGGAGGCGCCAGTGGCTACATGGTATTTTTTCTCCACAAGCACCACCAG
CATGTCTTCTACCTTCAGAGCTCCAAGCTTCTCTACAGAACTCCCCCTGAGCTGAGAGCTGCTCAAAGTG
TCTTCCTTCTGATGCTCTGTTTTGTTTTCTTCTACTGGACAGATTGTGCCTTTTCCCTAATTTTAAGTCT
CTTTTCAAGGGACAATAGATTGATGGCAAATACTCAAGAATTTCTGACCCTTGGTTATGCAACTTTTAGC
CCCTTGGTGCTGATTCACAAGGACGGGCTTCTGGTTGAATGTTGGCATGCTCAGTGGGAGAAATTGAGAA
AATGTCACTCTCATTTAAATGTCCAATAG

Translation (312 aa):
MDLKYIKEIIFIFITVVGTLGNMSVSVNYMFSWWGNPEKKSVHLILIHLAFTNIIILLTKGLPKTVAVFG
LRNFPDAIGCKIIVYLGRVARGLSICTSSLLTVVQAIIISPRASRWSRLRPRSAWHILLFFLYFWILNAL
ISMNLIHAITSTDLNISQLKNSNNYCYFMLENQEVKWIFLTLMVLRDAVFQGAMGGASGYMVFFLHKHHQ
HVFYLQSSKLLYRTPPELRAAQSVFLLMLCFVFFYWTDCAFSLILSLFSRDNRLMANTQEFLTLGYATFS
PLVLIHKDGLLVECWHAQWEKLRKCHSHLNVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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