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Report for CCDS62012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62012.1 Public Homo sapiens 16 SPATA33 24 110 108 CCDS HistoryNCBI Gene:124045Re-query CCDS DB by CCDS ID:62012.1Re-query CCDS DB by GeneID:124045See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 62012.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000579310.6 ENSP00000462996.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000579310.6Link to Ensembl Protein Viewer:ENSP00000462996.1Re-query CCDS DB by Nucleotide ID:ENST00000579310Re-query CCDS DB by Protein ID:ENSP00000462996
Original member Current member NCBI NM_001271907.2 NP_001258836.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001271907.2Link to Protein Sequence:NP_001258836.1Re-query CCDS DB by Nucleotide ID:NM_001271907Re-query CCDS DB by Protein ID:NP_001258836Link to BLAST:NP_001258836.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258836.1 140 Q96N06-2 140 100% 0 0

Chromosomal Locations for CCDS 62012.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 89657912 89657948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89658248 89658421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89669286 89669497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGGCCTTTCCAAAAGCAAAGAGAAACCCAGGAAAGGTGAGGAGCAAAAGAAGGGATCCACCTATTCAG
TTCCAAAATCTAAGGAGAAGTTGATGGAGAAGCATTCCCAGGAAGCCAGGCAGGCAGACAGGGAGTCGGA
GAAGCCTGTGGACAGCCTCCACCCGGGGGCCGGGACAGCCAAGCACCCGCCGCCGGCAGCTTCGCTGGAA
GAGAAACCTGATGTAAAGCAAAAGTCCAGCAGGAAGAAAGTGGTCGTTCCACAGATCATCATCACGCGAG
CGTCGAATGAGACGCTAGTCAGTTGCAGTTCCAGCGGGAGTGACCAGCAGAGAACCATTCGGGAGCCGGA
GGACTGGGGCCCCTACCGGCGGCACAGGAACCCCAGTACAGCAGACGCCTATAATTCACATCTCAAAGAA
TAA

Translation (140 aa):
MGLSKSKEKPRKGEEQKKGSTYSVPKSKEKLMEKHSQEARQADRESEKPVDSLHPGAGTAKHPPPAASLE
EKPDVKQKSSRKKVVVPQIIITRASNETLVSCSSSGSDQQRTIREPEDWGPYRRHRNPSTADAYNSHLKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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