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Report for CCDS12582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12582.1 Public Homo sapiens 19 B3GNT8 24 110 108 CCDS HistoryNCBI Gene:374907Re-query CCDS DB by CCDS ID:12582.1Re-query CCDS DB by GeneID:374907See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12582.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321702.2 ENSP00000312700.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000321702.2Link to Ensembl Protein Viewer:ENSP00000312700.1Re-query CCDS DB by Nucleotide ID:ENST00000321702Re-query CCDS DB by Protein ID:ENSP00000312700
Original member Current member EBI ENST00000691102.1 ENSP00000510371.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000691102.1Link to Ensembl Protein Viewer:ENSP00000510371.1Re-query CCDS DB by Nucleotide ID:ENST00000691102Re-query CCDS DB by Protein ID:ENSP00000510371
Original member Current member NCBI NM_001385648.2 NP_001372577.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001385648.2Link to Protein Sequence:NP_001372577.1Re-query CCDS DB by Nucleotide ID:NM_001385648Re-query CCDS DB by Protein ID:NP_001372577Link to BLAST:NP_001372577.1
Original member Current member NCBI NM_198540.2 NP_940942.1 Accepted alive Link to Nucleotide Sequence:NM_198540.2Link to Protein Sequence:NP_940942.1Re-query CCDS DB by Nucleotide ID:NM_198540Re-query CCDS DB by Protein ID:NP_940942Link to BLAST:NP_940942.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001372577.1 397 Q7Z7M8 397 100% 0 0
NP_940942.1 397 Q7Z7M8 397 100% 0 0

Chromosomal Locations for CCDS 12582.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41425585 41426778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGCGCTGCCCCAAGTGCCTTCTCTGCCTGTCAGCACTGCTCACACTCCTGGGCCTCAAAGTGTACATCG
AGTGGACATCCGAGTCCCGGCTCAGCAAGGCCTACCCCAGCCCTCGGGGCACCCCGCCAAGCCCCACGCC
AGCCAACCCTGAGCCCACCCTACCTGCCAACCTCTCCACCCGCCTGGGCCAGACTATCCCGCTGCCCTTT
GCTTACTGGAACCAGCAGCAGTGGCGGCTGGGGTCCCTGCCCAGTGGGGACAGCACTGAAACGGGGGGCT
GCCAGGCTTGGGGGGCCGCCGCCGCCACCGAGATCCCTGACTTCGCCTCCTACCCCAAGGACCTCCGCCG
CTTCTTGCTGTCAGCAGCCTGCCGGAGCTTCCCACAGTGGCTGCCTGGAGGTGGTGGCAGCCAAGTCTCC
AGCTGCTCAGATACTGATGTCCCCTACCTGCTGTTGGCCGTCAAGTCAGAACCAGGGCGCTTTGCAGAAC
GACAGGCCGTGAGAGAGACGTGGGGCAGTCCAGCTCCAGGGATCCGGCTGCTCTTCCTGCTAGGGTCTCC
GGTGGGTGAGGCGGGGCCTGACCTAGACTCACTAGTGGCCTGGGAGAGCCGTCGCTACAGTGACCTGCTG
CTCTGGGACTTCCTCGACGTCCCATTCAACCAGACGCTCAAAGACCTGCTGCTGCTGGCCTGGCTGGGCC
GCCACTGCCCCACCGTGAGTTTTGTCTTGCGAGCTCAGGACGATGCCTTTGTACACACCCCTGCCCTGCT
GGCTCACCTGCGGGCCCTGCCACCTGCCTCGGCCCGAAGCCTCTACCTGGGTGAGGTCTTTACCCAGGCC
ATGCCTCTCCGGAAGCCAGGAGGACCCTTCTATGTGCCCGAGTCCTTCTTCGAAGGTGGCTACCCAGCCT
ATGCAAGCGGGGGTGGCTACGTCATTGCCGGGCGCCTGGCACCCTGGCTGCTGCGGGCGGCAGCCCGTGT
GGCACCCTTCCCCTTTGAGGACGTCTACACTGGCCTTTGCATCCGAGCCCTGGGCCTGGTGCCCCAGGCC
CACCCAGGCTTCCTCACAGCCTGGCCAGCAGACCGCACTGCGGACCACTGTGCTTTCCGCAACCTGCTGC
TGGTACGGCCCCTGGGCCCCCAGGCCAGCATTCGGCTCTGGAAACAACTGCAAGACCCAAGGCTCCAGTG
CTGA

Translation (397 aa):
MRCPKCLLCLSALLTLLGLKVYIEWTSESRLSKAYPSPRGTPPSPTPANPEPTLPANLSTRLGQTIPLPF
AYWNQQQWRLGSLPSGDSTETGGCQAWGAAAATEIPDFASYPKDLRRFLLSAACRSFPQWLPGGGGSQVS
SCSDTDVPYLLLAVKSEPGRFAERQAVRETWGSPAPGIRLLFLLGSPVGEAGPDLDSLVAWESRRYSDLL
LWDFLDVPFNQTLKDLLLLAWLGRHCPTVSFVLRAQDDAFVHTPALLAHLRALPPASARSLYLGEVFTQA
MPLRKPGGPFYVPESFFEGGYPAYASGGGYVIAGRLAPWLLRAAARVAPFPFEDVYTGLCIRALGLVPQA
HPGFLTAWPADRTADHCAFRNLLLVRPLGPQASIRLWKQLQDPRLQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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