NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20074.1 Public Mus musculus 6 Tcaf3 23 108 98 CCDS HistoryNCBI Gene:403088Re-query CCDS DB by CCDS ID:20074.1Re-query CCDS DB by GeneID:403088See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20074.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069023.3 ENSMUSP00000064060.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069023.3Link to Ensembl Protein Viewer:ENSMUSP00000064060.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000069023Re-query CCDS DB by Protein ID:ENSMUSP00000064060
Original member Current member NCBI NM_203396.1 NP_981933.1 Accepted alive Link to Nucleotide Sequence:NM_203396.1Link to Protein Sequence:NP_981933.1Re-query CCDS DB by Nucleotide ID:NM_203396Re-query CCDS DB by Protein ID:NP_981933Link to BLAST:NP_981933.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_981933.1 914 Q6QR59 914 100% 0 0

Chromosomal Locations for CCDS 20074.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42587482 42587748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42589676 42590013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42591281 42591520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42591812 42592025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42592852 42592949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42593229 42594193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42596654 42597276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2745 nt):
ATGGCAACAACCCCTGATGCTGCTTTTGAGACCCTCATGAATGGAGTGACCAGCTGGGATCTTCCCAAAG
AACCCATTCCCAGTGAACTTCTCCTTACTGGGGAGTCAGCCTTCCCAGTGATGGTGAATGACAAGGGCCA
GGTGCTCATTGCTGCCTCTTCCTATGGACAAGGCCGCCTGGTGGTCGTATCCCATGAGAGCTACCTGCTG
CACGATGGCTTGGTTCCATTTCTTCTCAATGTGGTGAAATGGCTCTGCCCCTGCCCAGGGGCTCCCATAG
CGGTGCATTCTTCCTTAGCATCATTAGTTAACATCCTAGGTGATTCTGGGATAAATGCCTTGGTTCAGCC
TGAGCCTGGAGAGGCTCTGGGAGTTTATTGCATTGATGCCTACAATGATGCCTTGACTGAGAAGCTGATC
CAATTCCTGAAGAATGGAGGAGGTTTGCTAATTGGAGGCCAGGCTTTGAATTGGGCTGCTCACCATGGCC
ATGATAAAGTGCTATCCATTTTTCCTGGAAACCAGGTGACAAGTGTGGCTGGAGTATATTTCACTGATAT
CTCTGCGAATAGAGACTGGTTCAAGGTTTCTAAGGAGATACCCAATCTCAGACTCTATGTCCAGTGTGAG
GATGAGCTCGAGGACGACCAGCAGCAGCTCCTGAAAGGGATGTCTGAGATATACATCGAGGCGGGTGTAA
TCCCCTCCCAGCTGCTTGTGCATGGACAGCGGGCATTTCCCTTGGGAGTAGACAATTCACTCAATTGCTT
TCTTGCAGCTGCCCGCTATGGCCGTGGTCGGGTGGTGCTGGGGGGAAATGAGAGTCTCATACTTAATCAA
ACTATGCTGCCATTTGTGCTTAATGCTTTACACTGGCTGATGGGGAACCAGACAGGCAGAATTGGGTTAG
CTTCAGATATGAAAGTACTGAAGTCTATGTTACCAAACAGCAGTTTCCAGTGGAGTGAATCAGAACTTCT
AACCAGTGACTTGAGCGTGTTTTGCTGCTGCTCACTCGCCAATATAGATTCCGAGGAGGTAGAGGAATTT
GTTGCAGAAGGTGGAGGCTTGCTAATTGGTGCAGAGGCCTGGTCGTGGGGCCGCAGGAATCCATACTCTA
GCTGTATGACTCAATACCCAGATAACATCGTCCTTAAGCGCTTTGGCCTTGGTATCACTAGCCATGTGGC
CCAGCGAGGCAGTTTCCCATTCCCCAATCCTGAAGGGACAAACTATCACTTTCGGAGAGCCCTGTCTCAA
TTTGAGTCCGTGATCTACAGCCGGGGGAGTAGCTTACACGAGAGCTGGCTGAATAAGCTCTCACAAGATT
GTTTCTACATGTTTCAAATGACCCATCAGAGGATTTCCATCTACGACTCTGTGAAGAAACATGCTCTGAA
AATGATCCAAAGCAAGGACTTTCCAAGTGTGACTGAACAATACCCGATCGCAAGGGGCAGCTCACAGGCT
TTTCTTCTATCCCTGGCTTATGAATTATTCAAATCCGGAGTTGACAGATCTCAGCTACTTCCCCCTCCCG
CCTTACTACCTCCTACAGAATCTCCAATAACCATTAAAATAAGCACAGACAATGACAACTCCTGGGTGAG
CACTGGACTGTACTTACCTGAAGGGCAGGTTGCACAAGTATTACTTCCCAGTGAAGCTACTCATGCCAAG
CTGAAGGTCCTCATTGGCTGCCACAGGGACAACATAAGCCAAGCAAGAACTTACTTCCGTCCCCCTGTGA
TGACCTATGTGTACCACTTAACTTCATCCCAGACATCCATCTCCTGGCTCTATGGGGGCCTTCTCTACAT
CATGGTCCCCAACAAATATAATCAGGATAATGTGTCTGTCACCATCCGTGGGGCTGTATCTGCTCCATAC
TTCAGGCTGGGTAAGACGACCCAGGAGGAATGGAAGAATCTTATCACACACAGCAAAGCTCCGTGGGGAG
AACTAGCCACAGACAATATCATCCTGACAATTCCAACGGTAAACCTCAAGGAGCTTCAGGACCCCTATCC
ACTGCTCCAACTCTGGGACAAGATGGTAAGGGCTGTAGCCAAGCTGGCAGCCCGGCCCTTCCCTTTTCAG
AGAGCTGAGAGGGTCGTACTTGACAAGCAGATTTCATTCGGTTTCCTTCATTCTGGATACCCCATCATGG
GCCTAATTAGTATAGTAGAAGGCATCATCAGCGAGTTCAAAATAAGATCACATGGCATTTGGGGTGTGAT
ACATGAACTGGGCCACAACCATCAGAAGTCTGGATGGACTTTTCCACCTCACACCACCGAAGCTTTGTGC
AATCTCTGGACTATTTATGTGCATGAGACAGTTTTAAACATCCCCAGGGAGCAAGCCCATCCTTCTCTGA
ATCCTGAGCTTAGGAGGCAGAGGATCAAATACCACCTGAACAAGGGAGCACCTCTGAGCAACTGGATTAT
GTGGACAGCTCTAGAAACTTATCTCCAGCTCCAGGAGGGCTTTGGGTGGGAGCCATTCATCCAGGTCTTT
GCTGACTACCGAACCCTCTCTGGCCTTCCTCAAAACAATGAAGACAAGATGAATCTGTGGGTGAAGAAGT
TCTCTGAGGCTGTGCATAAGAATCTGGCACCTTTCTTTGAAGCCTGGGGCTGGCCTGTCAAATATGCTGT
GGCTAAAAGCCTAGCCTCTTTGCCAGAGTGGCAGGAAAACCCCATGAAAAGGTATACAGCTGAAGGTACA
GAAGGCAGAGAGTGA

Translation (914 aa):
MATTPDAAFETLMNGVTSWDLPKEPIPSELLLTGESAFPVMVNDKGQVLIAASSYGQGRLVVVSHESYLL
HDGLVPFLLNVVKWLCPCPGAPIAVHSSLASLVNILGDSGINALVQPEPGEALGVYCIDAYNDALTEKLI
QFLKNGGGLLIGGQALNWAAHHGHDKVLSIFPGNQVTSVAGVYFTDISANRDWFKVSKEIPNLRLYVQCE
DELEDDQQQLLKGMSEIYIEAGVIPSQLLVHGQRAFPLGVDNSLNCFLAAARYGRGRVVLGGNESLILNQ
TMLPFVLNALHWLMGNQTGRIGLASDMKVLKSMLPNSSFQWSESELLTSDLSVFCCCSLANIDSEEVEEF
VAEGGGLLIGAEAWSWGRRNPYSSCMTQYPDNIVLKRFGLGITSHVAQRGSFPFPNPEGTNYHFRRALSQ
FESVIYSRGSSLHESWLNKLSQDCFYMFQMTHQRISIYDSVKKHALKMIQSKDFPSVTEQYPIARGSSQA
FLLSLAYELFKSGVDRSQLLPPPALLPPTESPITIKISTDNDNSWVSTGLYLPEGQVAQVLLPSEATHAK
LKVLIGCHRDNISQARTYFRPPVMTYVYHLTSSQTSISWLYGGLLYIMVPNKYNQDNVSVTIRGAVSAPY
FRLGKTTQEEWKNLITHSKAPWGELATDNIILTIPTVNLKELQDPYPLLQLWDKMVRAVAKLAARPFPFQ
RAERVVLDKQISFGFLHSGYPIMGLISIVEGIISEFKIRSHGIWGVIHELGHNHQKSGWTFPPHTTEALC
NLWTIYVHETVLNIPREQAHPSLNPELRRQRIKYHLNKGAPLSNWIMWTALETYLQLQEGFGWEPFIQVF
ADYRTLSGLPQNNEDKMNLWVKKFSEAVHKNLAPFFEAWGWPVKYAVAKSLASLPEWQENPMKRYTAEGT
EGRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH