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Report for CCDS6004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6004.1 Public Homo sapiens 8 FGL1 24 110 108 CCDS HistoryNCBI Gene:2267Re-query CCDS DB by CCDS ID:6004.1Re-query CCDS DB by GeneID:2267See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6004.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381840.5 ENSP00000371262.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381840.5Link to Ensembl Protein Viewer:ENSP00000371262.2Re-query CCDS DB by Nucleotide ID:ENST00000381840Re-query CCDS DB by Protein ID:ENSP00000371262
Original member Current member EBI ENST00000381841.4 ENSP00000371263.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381841.4Link to Ensembl Protein Viewer:ENSP00000371263.2Re-query CCDS DB by Nucleotide ID:ENST00000381841Re-query CCDS DB by Protein ID:ENSP00000371263
Original member Current member EBI ENST00000398054.5 ENSP00000381131.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398054.5Link to Ensembl Protein Viewer:ENSP00000381131.1Re-query CCDS DB by Nucleotide ID:ENST00000398054Re-query CCDS DB by Protein ID:ENSP00000381131
Original member Current member EBI ENST00000398056.6 ENSP00000381133.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398056.6Link to Ensembl Protein Viewer:ENSP00000381133.2Re-query CCDS DB by Nucleotide ID:ENST00000398056Re-query CCDS DB by Protein ID:ENSP00000381133
Original member Current member EBI ENST00000427924.5 ENSP00000401952.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000427924.5Link to Ensembl Protein Viewer:ENSP00000401952.1Re-query CCDS DB by Nucleotide ID:ENST00000427924Re-query CCDS DB by Protein ID:ENSP00000401952
Original member Current member EBI ENST00000518650.5 ENSP00000428430.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000518650.5Link to Ensembl Protein Viewer:ENSP00000428430.1Re-query CCDS DB by Nucleotide ID:ENST00000518650Re-query CCDS DB by Protein ID:ENSP00000428430
Original member Current member EBI ENST00000522444.5 ENSP00000429757.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522444.5Link to Ensembl Protein Viewer:ENSP00000429757.1Re-query CCDS DB by Nucleotide ID:ENST00000522444Re-query CCDS DB by Protein ID:ENSP00000429757
Original member Current member NCBI NM_004467.4 NP_004458.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004467.4Link to Protein Sequence:NP_004458.3Re-query CCDS DB by Nucleotide ID:NM_004467Re-query CCDS DB by Protein ID:NP_004458Link to BLAST:NP_004458.3
Original member Current member NCBI NM_147203.2 NP_671736.2 Accepted alive Link to Nucleotide Sequence:NM_147203.2Link to Protein Sequence:NP_671736.2Re-query CCDS DB by Nucleotide ID:NM_147203Re-query CCDS DB by Protein ID:NP_671736Link to BLAST:NP_671736.2
Original member Current member NCBI NM_201552.1 NP_963846.1 Accepted alive Link to Nucleotide Sequence:NM_201552.1Link to Protein Sequence:NP_963846.1Re-query CCDS DB by Nucleotide ID:NM_201552Re-query CCDS DB by Protein ID:NP_963846Link to BLAST:NP_963846.1
Original member Current member NCBI NM_201553.1 NP_963847.1 Accepted alive Link to Nucleotide Sequence:NM_201553.1Link to Protein Sequence:NP_963847.1Re-query CCDS DB by Nucleotide ID:NM_201553Re-query CCDS DB by Protein ID:NP_963847Link to BLAST:NP_963847.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004458.3 312 Q08830 312 100% 0 0
NP_671736.2 312 Q08830 312 100% 0 0
NP_963846.1 312 Q08830 312 100% 0 0
NP_963847.1 312 Q08830 312 100% 0 0

Chromosomal Locations for CCDS 6004.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 17864592 17864751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17868548 17868735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17868916 17869004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17874019 17874116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17874362 17874521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17881999 17882179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 17885492 17885554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGCAAAGGTGTTCAGTTTCATCCTTGTTACCACCGCTCTGACAATGGGCAGGGAAATTTCGGCGCTCG
AGGACTGTGCCCAGGAGCAGATGCGGCTCAGAGCCCAGGTGCGCCTGCTTGAGACCCGGGTCAAACAGCA
ACAGGTCAAGATCAAGCAGCTTTTGCAGGAGAATGAAGTCCAGTTCCTTGATAAAGGAGATGAGAATACT
GTCATTGATCTTGGAAGCAAGAGGCAGTATGCAGATTGTTCAGAGATTTTCAATGATGGGTATAAGCTCA
GTGGATTTTACAAAATCAAACCTCTCCAGAGCCCAGCAGAATTTTCTGTTTATTGTGACATGTCCGATGG
AGGAGGATGGACTGTAATTCAGAGACGATCTGATGGCAGTGAAAACTTTAACAGAGGATGGAAAGACTAT
GAAAATGGCTTTGGAAATTTTGTCCAAAAACATGGTGAATATTGGCTGGGCAATAAAAATCTTCACTTCT
TGACCACTCAAGAAGACTACACTTTAAAAATCGACCTTGCAGATTTTGAAAAAAATAGCCGTTATGCACA
ATATAAGAATTTCAAAGTTGGAGATGAAAAGAATTTCTACGAGTTGAATATTGGGGAATATTCTGGAACA
GCTGGAGATTCCCTTGCGGGGAATTTTCATCCTGAGGTGCAGTGGTGGGCTAGTCACCAAAGAATGAAAT
TCAGCACGTGGGACAGAGATCATGACAACTATGAAGGGAACTGCGCAGAAGAAGATCAGTCTGGCTGGTG
GTTTAACAGGTGTCACTCTGCAAACCTGAATGGTGTATACTACAGCGGCCCCTACACGGCTAAAACAGAC
AATGGGATTGTCTGGTACACCTGGCATGGGTGGTGGTATTCTCTGAAATCTGTGGTTATGAAAATTAGGC
CAAATGATTTTATTCCAAATGTAATTTAA

Translation (312 aa):
MAKVFSFILVTTALTMGREISALEDCAQEQMRLRAQVRLLETRVKQQQVKIKQLLQENEVQFLDKGDENT
VIDLGSKRQYADCSEIFNDGYKLSGFYKIKPLQSPAEFSVYCDMSDGGGWTVIQRRSDGSENFNRGWKDY
ENGFGNFVQKHGEYWLGNKNLHFLTTQEDYTLKIDLADFEKNSRYAQYKNFKVGDEKNFYELNIGEYSGT
AGDSLAGNFHPEVQWWASHQRMKFSTWDRDHDNYEGNCAEEDQSGWWFNRCHSANLNGVYYSGPYTAKTD
NGIVWYTWHGWWYSLKSVVMKIRPNDFIPNVI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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