NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8656.1 Public Homo sapiens 12 DDX47 24 110 108 CCDS HistoryNCBI Gene:51202Re-query CCDS DB by CCDS ID:8656.1Re-query CCDS DB by GeneID:51202See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8656.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000352940.8 ENSP00000319578.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000352940.8Link to Ensembl Protein Viewer:ENSP00000319578.6Re-query CCDS DB by Nucleotide ID:ENST00000352940Re-query CCDS DB by Protein ID:ENSP00000319578
Original member Current member NCBI NM_201224.2 NP_957518.1 Accepted alive Link to Nucleotide Sequence:NM_201224.2Link to Protein Sequence:NP_957518.1Re-query CCDS DB by Nucleotide ID:NM_201224Re-query CCDS DB by Protein ID:NP_957518Link to BLAST:NP_957518.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_957518.1 406 Q9H0S4-2 406 100% 0 0

Chromosomal Locations for CCDS 8656.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 12813368 12813454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12814131 12814224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12821208 12821396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12821655 12821726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12821965 12822083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12822661 12822732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12823203 12823319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12824540 12824677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12826000 12826070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12827246 12827375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12829423 12829554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGCGGCACCCGAGGAACACGATTCTCCGACCGAAGCGTCCCAGCCGATTGTGGAAGAGGAGGAAACTA
AAACATTTAAAGACCTGGGTGTGACAGATGTGTTGTGTGAAGCTTGTGACCAGTTGGGATGGACAAAACC
CACCAAGATCCAGATTGAAGCTATTCCTTTGGCCTTACAAGGTCGTGATATCATTGGGCTTGCAGAAACT
GGCTCTGGAAAGACAGGCGCCTTTGCTTTGCCCATTCTAAACGCACTGCTGGAGACCCCGCAGCGTTTGT
TTGCCCTAGTTCTTACCCCGACTCGGGAGCTGGCCTTTCAGATCTCAGAGCAGTTTGAAGCCCTGGGGTC
CTCTATTGGAGTGCAGAGTGCTGTGATTGTAGGTGGAATTGATTCAATGTCTCAATCTTTGGCCCTTGCA
AAAAAACCACATATAATAATAGCAACTCCTGGTCGACTGATTGACCACTTGGAAAATACGAAAGGTTTCA
ACTTGAGAGCTCTCAAATACTTGGTCATGGATGAAGCCGACCGAATACTGAATATGGATTTTGAGACAGA
GGTTGACAAGATCCTCAAAGTGATTCCTCGAGATCGGAAAACATTCCTCTTCTCTGCCACCATGACCAAG
AAGGTTCAAAAACTTCAGCGAGCAGCTCTGAAGAATCCTGTGAAATGTGCCGTTTCCTCTAAATACCAGA
CAGTTGAAAAATTACAGCAATATTATATTTTTATTCCCTCTAAATTCAAGAGTAAGCGCCTAGGATCCCT
TAATAAGTTTAAGGCCAAGGCCCGTTCCATTCTTCTAGCAACTGACGTTGCCAGCCGAGGTTTGGACATA
CCTCATGTAGATGTGGTTGTCAACTTTGACATTCCTACCCATTCCAAGGATTACATCCATCGAGTAGGTC
GAACAGCTAGAGCTGGGCGCTCCGGAAAGGCTATTACTTTTGTCACACAGTATGATGTGGAACTCTTCCA
GCGCATAGAACACTTAATTGGGAAGAAACTACCAGGTTTTCCAACACAGGATGATGAGGTTATGATGCTG
ACAGAACGCGTCGCTGAAGCCCAAAGGTTTGCCCGAATGGAGTTAAGGGAGCATGGAGAAAAGAAGAAAC
GCTCGCGAGAGGATGCTGGAGATAATGATGACACAGAGGGTGCTATTGGTGTCAGGAACAAGGTGGCTGG
AGGAAAAATGAAGAAGCGGAAAGGCCGTTAA

Translation (406 aa):
MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAET
GSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA
KKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK
KVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKSKRLGSLNKFKAKARSILLATDVASRGLDI
PHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMML
TERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAIGVRNKVAGGKMKKRKGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH