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Report for CCDS63971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63971.1 Public Homo sapiens 4 SPINK2 24 110 108 CCDS HistoryNCBI Gene:6691Re-query CCDS DB by CCDS ID:63971.1Re-query CCDS DB by GeneID:6691See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 63971.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000506738.6 ENSP00000425961.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000506738.6Link to Ensembl Protein Viewer:ENSP00000425961.1Re-query CCDS DB by Nucleotide ID:ENST00000506738Re-query CCDS DB by Protein ID:ENSP00000425961
Original member Current member NCBI NM_001271718.2 NP_001258647.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001271718.2Link to Protein Sequence:NP_001258647.1Re-query CCDS DB by Nucleotide ID:NM_001271718Re-query CCDS DB by Protein ID:NP_001258647Link to BLAST:NP_001258647.1

Chromosomal Locations for CCDS 63971.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 56810139 56810184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56811685 56811794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56820536 56820579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56821458 56821662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGGCGCTGTCGGTGCTGCGCTTGGCGCTGCTGCTCCTGGCAGTTACCTTCGCAGGTAGCGCTCGGAGCG
GTCCTGGCGAGCGGGGACCTCCGGAGAAAAGCGGGTTTGGGAGTCAGACCGGCGGCGGACCCTGCCCTGC
TCCGGGCGGCCTCGGCGACGGTACCCGCGCGCCCGTTACTGGCGGTTCCCCAGAGGACCTGCCAGCCTCT
CTGATCCCTCAATTTGGTCTGTTTTCAAAATATAGAACGCCAAACTGCTCTCAGTATAGATTACCAGGAT
GTCCCAGACACTTTAACCCTGTGTGTGGCAGTGACATGTCCACTTATGCCAATGAATGTACTCTGTGCAT
GAAAATCAGGGAAGGTGGTCATAATATTAAAATCATTCGAAATGGACCCTGCTGA

Translation (134 aa):
MALSVLRLALLLLAVTFAGSARSGPGERGPPEKSGFGSQTGGGPCPAPGGLGDGTRAPVTGGSPEDLPAS
LIPQFGLFSKYRTPNCSQYRLPGCPRHFNPVCGSDMSTYANECTLCMKIREGGHNIKIIRNGPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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