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Report for CCDS6976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6976.1 Public Homo sapiens 9 ADAMTSL2 24 110 108 CCDS HistoryNCBI Gene:9719Re-query CCDS DB by CCDS ID:6976.1Re-query CCDS DB by GeneID:9719See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 6976.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354484.8 ENSP00000346478.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354484.8Link to Ensembl Protein Viewer:ENSP00000346478.4Re-query CCDS DB by Nucleotide ID:ENST00000354484Re-query CCDS DB by Protein ID:ENSP00000346478
Original member Current member EBI ENST00000393060.1 ENSP00000376780.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393060.1Link to Ensembl Protein Viewer:ENSP00000376780.1Re-query CCDS DB by Nucleotide ID:ENST00000393060Re-query CCDS DB by Protein ID:ENSP00000376780
Original member Current member EBI ENST00000651351.2 ENSP00000498961.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651351.2Link to Ensembl Protein Viewer:ENSP00000498961.2Re-query CCDS DB by Nucleotide ID:ENST00000651351Re-query CCDS DB by Protein ID:ENSP00000498961
Original member Current member NCBI NM_001145320.2 NP_001138792.1 Accepted alive Link to Nucleotide Sequence:NM_001145320.2Link to Protein Sequence:NP_001138792.1Re-query CCDS DB by Nucleotide ID:NM_001145320Re-query CCDS DB by Protein ID:NP_001138792Link to BLAST:NP_001138792.1
Original member Current member NCBI NM_014694.4 NP_055509.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014694.4Link to Protein Sequence:NP_055509.2Re-query CCDS DB by Nucleotide ID:NM_014694Re-query CCDS DB by Protein ID:NP_055509Link to BLAST:NP_055509.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138792.1 951 Q86TH1 951 100% 0 0
NP_055509.2 951 Q86TH1 951 100% 0 0

Chromosomal Locations for CCDS 6976.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 133536713 133536802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133537405 133537547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133538349 133538424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133539771 133539873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133540598 133540743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133540878 133541001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133544470 133544550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133547038 133547213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133554357 133554693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133555558 133555930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133561198 133561295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133566936 133567062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133568273 133568486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133568603 133568758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133569408 133569578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133570331 133570507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133573843 133573987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133574746 133574864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2856 nt):
ATGGATGGCAGATGGCAATGTTCCTGCTGGGCCTGGTTCCTGCTGGTTCTGGCAGTTGTAGCTGGGGACA
CAGTGTCAACCGGGTCCACGGACAACAGCCCAACATCCAATAGCCTGGAGGGGGGCACCGACGCCACGGC
CTTCTGGTGGGGGGAGTGGACCAAGTGGACGGCGTGTTCCCGCAGTTGCGGGGGTGGGGTGACATCCCAG
GAGCGGCACTGCCTGCAGCAGAGGAGGAAGTCCGTCCCGGGCCCCGGGAACAGGACCTGCACGGGCACGT
CCAAGCGGTACCAGCTCTGCAGAGTGCAGGAGTGTCCGCCGGACGGGAGGAGCTTCCGCGAGGAGCAGTG
CGTCTCCTTCAACTCCCACGTGTACAACGGGCGGACGCACCAGTGGAAGCCTCTGTACCCGGATGACTAT
GTCCACATCTCCAGCAAACCGTGTGACCTGCACTGTACCACCGTGGACGGCCAGCGGCAGCTCATGGTCC
CCGCCCGCGACGGCACATCCTGCAAGCTCACTGACCTGCGAGGGGTTTGCGTGTCTGGAAAATGTGAGCC
CATCGGCTGTGACGGGGTGCTTTTCTCCACCCACACACTGGACAAGTGTGGCATCTGCCAGGGGGACGGT
AGCAGCTGCACCCACGTGACGGGCAACTATCGCAAGGGGAATGCCCACCTTGGTTACTCTCTGGTGACCC
ACATCCCGGCTGGTGCCCGAGACATCCAGATTGTAGAGAGGAAGAAGTCCGCTGACGTGCTAGCTCTTGC
AGACGAAGCTGGCTACTACTTCTTCAACGGCAACTACAAGGTGGACAGCCCCAAGAACTTCAACATCGCA
GGCACGGTGGTCAAGTACAGGCGGCCCATGGATGTCTATGAGACCGGAATCGAGTACATCGTGGCACAGG
GGCCCACCAACCAGGGCCTGAATGTCATGGTGTGGAACCAGAACGGCAAAAGCCCCTCCATCACCTTCGA
GTACACGCTGCTGCAGCCGCCACACGAGAGCCGCCCCCAGCCCATCTACTATGGCTTCTCCGAGAGCGCT
GAGAGCCAGGGCCTGGACGGGGCCGGGCTGATGGGCTTCGTCCCGCACAACGGCTCCCTCTACGGCCAGG
CCTCCTCAGAGCGGCTGGGCCTGGACAACCGGCTGTTCGGCCACCCGGGCCTGGACATGGAGCTGGGCCC
CAGCCAGGGCCAGGAGACCAACGAGGTGTGCGAGCAGGCCGGCGGCGGGGCCTGCGAGGGGCCCCCCAGG
GGCAAGGGCTTCCGAGACCGCAACGTCACGGGGACTCCTCTCACCGGGGACAAGGATGACGAAGAGGTTG
ACACCCACTTCGCCTCCCAGGAGTTCTTCTCGGCTAACGCCATCTCTGACCAGCTGCTGGGCGCAGGCTC
TGACTTGAAGGACTTCACCCTCAATGAGACTGTGAACAGCATCTTTGCACAGGGCGCCCCAAGGAGCTCC
CTGGCCGAGAGCTTCTTCGTGGATTATGAGGAGAACGAGGGGGCTGGCCCTTACCTGCTCAACGGGTCCT
ACCTGGAGCTGAGCAGCGACAGGGTTGCCAACAGCTCCTCCGAGGCCCCATTCCCCAACGTTAGCACCAG
CCTGCTCACCTCGGCCGGGAACAGGACTCACAAGGCCAGGACCAGGCCCAAGGCGCGCAAGCAAGGCGTG
AGTCCCGCGGACATGTACCGGTGGAAGCTCTCGTCCCACGAGCCCTGCAGTGCCACCTGCACCACAGGGG
TCATGTCTGCGTACGCCATGTGTGTCCGCTATGATGGCGTCGAGGTGGATGACAGCTACTGTGACGCCCT
GACCCGTCCCGAGCCTGTCCACGAGTTCTGCGCTGGGAGGGAGTGCCAGCCCAGGTGGGAGACGAGCAGC
TGGAGCGAGTGTTCGCGCACCTGCGGAGAGGGCTACCAGTTCCGCGTCGTGCGCTGCTGGAAGATGCTCT
CGCCCGGCTTCGACAGCTCCGTGTACAGCGACCTGTGCGAGGCAGCCGAGGCCGTGCGGCCCGAGGAACG
CAAGACCTGCCGGAACCCCGCCTGCGGGCCCCAGTGGGAGATGTCGGAGTGGTCCGAGTGCACTGCCAAG
TGTGGGGAGCGCAGTGTGGTGACCAGGGACATCCGCTGCTCGGAGGATGAGAAGCTGTGTGACCCCAACA
CCAGGCCTGTAGGGGAGAAGAACTGCACGGGCCCGCCCTGTGACCGGCAGTGGACCGTCTCCGACTGGGG
ACCGTGCAGTGGAAGCTGCGGGCAAGGCCGCACCATCAGGCACGTGTACTGCAAGACCAGCGACGGACGG
GTAGTACCTGAGTCCCAGTGCCAGATGGAGACCAAGCCTCTGGCCATCCACCCCTGTGGGGACAAAAACT
GTCCCGCCCACTGGCTGGCCCAGGACTGGGAGCGGTGCAACACCACCTGCGGGCGCGGGGTCAAGAAGCG
GCTGGTGCTCTGCATGGAGCTGGCCAACGGGAAGCCGCAGACGCGCAGTGGCCCCGAGTGCGGGCTCGCC
AAGAAGCCTCCCGAGGAGAGCACGTGTTTCGAGAGGCCCTGCTTCAAGTGGTACACCAGCCCCTGGTCAG
AGTGCACCAAGACCTGCGGGGTGGGCGTGAGGATGCGAGACGTCAAGTGCTACCAGGGGACCGACATCGT
CCGTGGTTGCGATCCGTTGGTGAAGCCCGTTGGCAGACAGGCCTGTGATCTGCAGCCCTGCCCCACGGAG
CCCCCAGATGACAGCTGCCAGGACCAGCCAGGCACCAACTGTGCCCTGGCCATCAAAGTGAACCTCTGCG
GGCACTGGTACTACAGCAAGGCGTGCTGCCGCTCCTGCAGGCCCCCCCACTCCTAG

Translation (951 aa):
MDGRWQCSCWAWFLLVLAVVAGDTVSTGSTDNSPTSNSLEGGTDATAFWWGEWTKWTACSRSCGGGVTSQ
ERHCLQQRRKSVPGPGNRTCTGTSKRYQLCRVQECPPDGRSFREEQCVSFNSHVYNGRTHQWKPLYPDDY
VHISSKPCDLHCTTVDGQRQLMVPARDGTSCKLTDLRGVCVSGKCEPIGCDGVLFSTHTLDKCGICQGDG
SSCTHVTGNYRKGNAHLGYSLVTHIPAGARDIQIVERKKSADVLALADEAGYYFFNGNYKVDSPKNFNIA
GTVVKYRRPMDVYETGIEYIVAQGPTNQGLNVMVWNQNGKSPSITFEYTLLQPPHESRPQPIYYGFSESA
ESQGLDGAGLMGFVPHNGSLYGQASSERLGLDNRLFGHPGLDMELGPSQGQETNEVCEQAGGGACEGPPR
GKGFRDRNVTGTPLTGDKDDEEVDTHFASQEFFSANAISDQLLGAGSDLKDFTLNETVNSIFAQGAPRSS
LAESFFVDYEENEGAGPYLLNGSYLELSSDRVANSSSEAPFPNVSTSLLTSAGNRTHKARTRPKARKQGV
SPADMYRWKLSSHEPCSATCTTGVMSAYAMCVRYDGVEVDDSYCDALTRPEPVHEFCAGRECQPRWETSS
WSECSRTCGEGYQFRVVRCWKMLSPGFDSSVYSDLCEAAEAVRPEERKTCRNPACGPQWEMSEWSECTAK
CGERSVVTRDIRCSEDEKLCDPNTRPVGEKNCTGPPCDRQWTVSDWGPCSGSCGQGRTIRHVYCKTSDGR
VVPESQCQMETKPLAIHPCGDKNCPAHWLAQDWERCNTTCGRGVKKRLVLCMELANGKPQTRSGPECGLA
KKPPEESTCFERPCFKWYTSPWSECTKTCGVGVRMRDVKCYQGTDIVRGCDPLVKPVGRQACDLQPCPTE
PPDDSCQDQPGTNCALAIKVNLCGHWYYSKACCRSCRPPHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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