NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3658.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3658.1 Public Homo sapiens 4 MANBA 24 110 108 CCDS HistoryNCBI Gene:4126Re-query CCDS DB by CCDS ID:3658.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3658.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000647097.2 ENSP00000495247.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000647097.2Link to Ensembl Protein Viewer:ENSP00000495247.1Re-query CCDS DB by Nucleotide ID:ENST00000647097Re-query CCDS DB by Protein ID:ENSP00000495247
Original member Current member NCBI NM_005908.4 NP_005899.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005908.4Link to Protein Sequence:NP_005899.3Re-query CCDS DB by Nucleotide ID:NM_005908Re-query CCDS DB by Protein ID:NP_005899Link to BLAST:NP_005899.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005899.3 879 O00462 879 100% 0 0

Chromosomal Locations for CCDS 3658.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 102632057 102632281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102634788 102635045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102635865 102636007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102639713 102639857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102650537 102650701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102657682 102657900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102664685 102664852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102668963 102669049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102671281 102671398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102673919 102674070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102689574 102689684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102690596 102690771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102714438 102714561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102722871 102723041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102723862 102723967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102726589 102726683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102760718 102760894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2640 nt):
ATGCGCCTCCACCTGCTCCTGCTGCTCGCGCTGTGCGGTGCAGGCACCACCGCCGCGGAGCTCAGTTACA
GCTTGCGTGGCAACTGGAGCATCTGCAATGGGAACGGCTCGCTGGAGCTGCCCGGGGCGGTCCCTGGCTG
CGTGCACAGCGCCTTGTTCCAGCAGGGCCTGATCCAGGATTCTTACTACAGATTTAATGACCTTAACTAC
AGATGGGTCTCTTTGGATAACTGGACCTATAGCAAAGAATTTAAAATCCCCTTTGAAATTAGCAAATGGC
AAAAAGTAAATTTGATTCTTGAGGGAGTGGATACGGTTTCAAAAATCCTGTTCAATGAAGTCACTATTGG
GGAAACAGACAATATGTTCAATAGATATAGCTTTGATATTACCAACGTGGTCAGGGACGTGAACTCCATT
GAGCTGCGTTTCCAGTCAGCGGTGTTGTATGCAGCACAGCAGAGCAAAGCTCACACTCGCTACCAGGTTC
CCCCAGACTGCCCTCCACTTGTGCAGAAGGGTGAATGCCATGTCAACTTTGTTCGGAAGGAGCAATGTTC
CTTTAGTTGGGACTGGGGGCCTTCCTTTCCTACCCAGGGAATCTGGAAAGATGTTAGAATTGAAGCCTAT
AATATTTGTCACCTGAACTACTTCACATTTTCCCCAATATATGATAAGAGTGCCCAGGAGTGGAATCTGG
AAATAGAGTCTACATTTGATGTTGTCAGCTCAAAGCCAGTTGGTGGTCAAGTGATCGTAGCCATCCCTAA
GTTGCAAACACAACAGACATACAGCATTGAACTTCAACCTGGGAAAAGGATTGTTGAGCTATTTGTGAAC
ATTAGCAAGAATATTACTGTAGAAACTTGGTGGCCTCATGGACATGGAAACCAGACTGGGTACAACATGA
CTGTTCTTTTTGAACTGGATGGAGGCTTAAATATTGAAAAATCAGCTAAGGTTTATTTTAGGACAGTGGA
ACTTATAGAAGAGCCTATAAAAGGGTCTCCTGGTTTGAGTTTCTATTTCAAAATTAATGGATTTCCCATA
TTTCTAAAAGGCTCAAACTGGATCCCAGCAGATTCATTCCAGGACCGAGTAACCTCTGAGTTGTTACGGC
TCCTTTTACAGTCTGTTGTGGATGCTAATATGAATACTCTTCGGGTTTGGGGAGGAGGAATTTATGAGCA
GGATGAATTCTATGAACTCTGTGATGAACTAGGAATAATGGTATGGCAGGATTTTATGTTTGCCTGTGCC
CTTTATCCAACTGATCAGGGCTTCCTGGATTCAGTGACAGCAGAAGTTGCCTACCAGATCAAGAGACTGA
AATCTCATCCTTCTATCATCATATGGAGTGGCAATAATGAAAATGAGGAGGCGCTGATGATGAATTGGTA
TCATATCAGTTTCACTGACCGGCCAATCTACATCAAGGACTATGTGACACTCTATGTGAAAAACATCAGA
GAGCTCGTACTGGCAGGAGACAAGAGTCGTCCTTTTATTACGTCCAGTCCTACAAATGGGGCTGAAACTG
TTGCAGAAGCCTGGGTCTCTCAAAACCCTAATAGCAATTATTTTGGTGATGTACATTTTTATGACTATAT
CAGTGATTGCTGGAACTGGAAAGTTTTCCCAAAAGCTCGATTTGCATCTGAATATGGATATCAGTCCTGG
CCGTCCTTCAGTACATTAGAAAAGGTCTCGTCTACAGAGGACTGGTCTTTCAATAGCAAGTTTTCACTTC
ATCGACAACATCACGAAGGTGGTAACAAACAAATGCTTTATCAGGCTGGACTTCATTTCAAACTCCCCCA
AAGCACAGATCCATTACGCACATTTAAAGATACCATCTACCTTACTCAGGTGATGCAGGCCCAGTGTGTC
AAAACAGAAACTGAATTCTACCGCCGTAGTCGCAGCGAGATAGTGGATCAGCAAGGGCACACGATGGGGG
CACTTTATTGGCAGTTGAATGACATCTGGCAAGCTCCTTCCTGGGCTTCTCTTGAGTACGGAGGAAAGTG
GAAAATGCTTCATTACTTTGCTCAGAATTTCTTTGCTCCACTGTTGCCAGTAGGCTTTGAGAATGAAAAC
ACGTTCTATATCTATGGTGTGTCAGATCTTCACTCGGATTATTCGATGACACTCAGTGTGAGAGTCCATA
CATGGAGCTCCCTGGAGCCCGTGTGCTCTCGTGTGACTGAACGTTTTGTGATGAAAGGAGGAGAGGCTGT
CTGCCTTTATGAGGAGCCAGTGTCTGAATTGCTGAGGAGATGTGGGAATTGCACACGGGAAAGCTGTGTG
GTTTCCTTTTACCTTTCAGCTGACCATGAACTCCTGAGCCCGACCAACTACCACTTCTTGTCCTCACCGA
AGGAGGCCGTGGGGCTCTGCAAGGCGCAGATCACTGCCATCATCTCTCAGCAAGGTGACATATTTGTTTT
TGACCTGGAGACCTCAGCTGTCGCTCCCTTTGTTTGGTTGGATGTAGGAAGCATCCCAGGGAGATTTAGT
GACAATGGTTTCCTCATGACTGAGAAGACACGAACTATATTATTTTACCCTTGGGAGCCCACCAGCAAGA
ATGAGTTGGAGCAATCTTTTCATGTGACCTCCTTAACAGATATTTACTGA

Translation (879 aa):
MRLHLLLLLALCGAGTTAAELSYSLRGNWSICNGNGSLELPGAVPGCVHSALFQQGLIQDSYYRFNDLNY
RWVSLDNWTYSKEFKIPFEISKWQKVNLILEGVDTVSKILFNEVTIGETDNMFNRYSFDITNVVRDVNSI
ELRFQSAVLYAAQQSKAHTRYQVPPDCPPLVQKGECHVNFVRKEQCSFSWDWGPSFPTQGIWKDVRIEAY
NICHLNYFTFSPIYDKSAQEWNLEIESTFDVVSSKPVGGQVIVAIPKLQTQQTYSIELQPGKRIVELFVN
ISKNITVETWWPHGHGNQTGYNMTVLFELDGGLNIEKSAKVYFRTVELIEEPIKGSPGLSFYFKINGFPI
FLKGSNWIPADSFQDRVTSELLRLLLQSVVDANMNTLRVWGGGIYEQDEFYELCDELGIMVWQDFMFACA
LYPTDQGFLDSVTAEVAYQIKRLKSHPSIIIWSGNNENEEALMMNWYHISFTDRPIYIKDYVTLYVKNIR
ELVLAGDKSRPFITSSPTNGAETVAEAWVSQNPNSNYFGDVHFYDYISDCWNWKVFPKARFASEYGYQSW
PSFSTLEKVSSTEDWSFNSKFSLHRQHHEGGNKQMLYQAGLHFKLPQSTDPLRTFKDTIYLTQVMQAQCV
KTETEFYRRSRSEIVDQQGHTMGALYWQLNDIWQAPSWASLEYGGKWKMLHYFAQNFFAPLLPVGFENEN
TFYIYGVSDLHSDYSMTLSVRVHTWSSLEPVCSRVTERFVMKGGEAVCLYEEPVSELLRRCGNCTRESCV
VSFYLSADHELLSPTNYHFLSSPKEAVGLCKAQITAIISQQGDIFVFDLETSAVAPFVWLDVGSIPGRFS
DNGFLMTEKTRTILFYPWEPTSKNELEQSFHVTSLTDIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH