CCDS Report for Consensus CDS

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Report for CCDS89224.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
89224.1	Public	Mus musculus	18	Slc4a9	23	108	98

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89224.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000236779.1	ENSMUSP00000158033.1	Accepted	alive
		NCBI	NM_001271547.1	NP_001258476.1	Accepted	alive

Chromosomal Locations for CCDS 89224.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)

Genome Browser links:

Chromosome	Start	Stop
18	36528187	36528404
18	36528643	36528803
18	36529216	36529329
18	36529687	36529736
18	36529873	36530030
18	36530276	36530363
18	36530714	36530868
18	36531100	36531216
18	36531352	36531526
18	36531678	36531811
18	36531970	36532232
18	36533185	36533243
18	36533577	36533762
18	36533889	36534002
18	36535282	36535443
18	36535523	36535701
18	36536847	36536919
18	36540736	36540891
18	36541199	36541252

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2616 nt):
ATGAAGCTGCCAGGGCAGGGGGATTTTGAAAGCTCTGATGCTCATGAAAATGCTCACTCAGAGGAACCGG ACAGTGGCCTAGGCCCTGGCCCTGGCCTTAATGGACCCTCAGGCATAGACATTGGGGAATCTCAGGTGTC TAAGGACCCTCTGCTCTTCATTCAACTAAATGAGCTGCTGGGTTGGCCCCAGGCACTAGAGTGGCGAGAG ACAGGCAGGTGGCTGCTGTTCGAGGAAAAGCTAGACATGGGCGCGGGCCGGTGGAGTGCTCCCCATGTGC CTACCCTGGAACTCCCCAGCCTCCAGAAGCTTCGAAGTCTGTTGGCCGAGGGCATTGTCCTGCTAGACTG TCAGGCTCAGAGCCTCCTGGAGCTTGTGGAGCAGGTAGTCAGTGGGGAGTCACTGAGCCCAGAACTGAGA GGACAGCTTCAGGCCTTGCTCCTGCAGAGACCCCAGCACCACATCCAGACCATGGGCATCAGGCCCTGCA GAGAGTCCAATGCTTTCAGAAAGGCTTCTCGTGATGAGGACGCCCCACTGAAGCACCAGAACCCTTTGAG ACAGAAGCTGCCCGCTGGAGCTGAGGCAGCGGCAGTGTTGGCAGGAGAGCTGGGCTTCCTGGAACAGCCA CTAGGGGCCTTCGTAAGACTGCGGAATCCTATAGTGCTGGAGCCTCTTACAGAGATGATCTTGCCCAGCA GATTTTTCTGCCTCCTCTTGGGTCCTCCCACCCTGGGAAGGAGCTACCATGAGATGGGACGGGCAGCTGC TGTCCTCCTCAGTGACCCGCAATTCCAGTGGTCAGTTCGTCGGGCAAGCCATCTTCCTGACCTTCTGGCA GCTCTGGATGCCTTCCTGCAGGAGGTGACAGCTCTACCCCCGGGCCGGTGGGACCGGACAGCCCGGATTC CCCCACCCAAATACCTACCATCTCAGCACAAAAGATTCCCCTCGAAACTGCAGGAGGTCACCAGCCTCTC CCGACAGAGTGCTGCCCTAGCAGAAGACAAGCACCATCACGGACCGCACACACCCATCCCAGAATTGCAA AGGACAGGCAGGCTCTTTGGGGGTCTTATTCAGGACGTGCGCCGGAAGGCATGTTGGTACACCAGTGATT TCCTGGATGCCCTACACCCCCAGTGTTTCTCAGCTGTGTTCTACATTTACCTGGCCACAGTCACAAACGC CATCACTTTTGGGGGTCTTCTGGGAGATGCCACTGAAGGTGCCCAGGGAGTGCTGGAGAGTTTCCTGGGC ACAGCGGTGGCTGGAGCTGCCTTCTGCCTGATGGCAGGCCAGCCCCTCACTATCCTTAGCAGCACAGGGC CAGTGCTGGTATTTGAGCGCCTACTCTTCTCTTTTAGCAGAGATTACAGCCTGGATTATCTGCCCTTCCG CCTATGGGTCGGCATCTGGGTGACCGCATTTTGCCTGGCACTGGTGGCTACGGAGGCCAGCTTGCTGGTG CGCTACTTCACCAGATTCACAGAGGAAGGATTCTGTGCCCTCATCAGCCTCATCTTCATCTATGATGCCA TGGGGAAGATGCTGAATTTGATCCGTGCCTATCCAATCCAAAGGCCAGGGTCTTCTGCCTATGGTTGCTT CTGTCAATACCCAGGCACAGGAGGAAACACGTCTGAATGGACGAGTGCAAAGCTCAAAGACACAGAGGAC ATCTTAAGTGTGCCAGGTCTAGTCAATGCTTCCTTCCTGCCTCCACCTGAGTGCATCCGGCAAGGAGGTC ACCCTCTCGGCCCCAGCTGTCACACGGTGCCAGACATCGCCTTCTTCTCCCTTCTCCTCTTCTTTACTTC TTTCCTTTGTGCCATTGCTCTCAAGCACATAAAGAACAGCCGCTTCTTCCCCTCTGTGGTGCGCAAGGTG TTGGGCGACTTTTCCTCAGTCCTGGCCATCCTGCTGGGCTGTGGCCTTGACACCTTCCTGGGCCTAGCCA CACCGAAGCTCTTGGTGCCCACAGAATTCAAGCCTACACTCTCTGGGCGTGGCTGGCTGGTGTCTCCTTT TGGAGCTAACCCCTGGTGGCTGAGTGTGGCCGCTGCCTTGCCCGCTCTACTGCTGTCAATCCTTATCTTC ATGGACCAGCAGATCACGGCAGTCATCCTCAACCGTGCAGAATACAGACTGCAGAAGGGAGCTGGCTTCC ACCTGGACCTCTTCTGTGTGGCTGTTTTGATGCTGTTCACATCGGCACTTGGGCTGCCATGGTACGTCTC AGCCACTGTCATCTCCTTGGCCCACATAGACAGTCTTCGGAGAGAGAGCAAAGCCTGCATCCCTGGAGAA GCCCCCAATTTCCTGGGCATCAGGGAACAGAGGCTGACGGGCTTGGTGGTGTTCGTCCTTACAGGTGTCT CCATCTTCCTGGCACCTGTGCTCAAGTTACTGGGCCTGGTGGCCATCCGGAAGGCACTGGAGTGGGTCTT CTCACCACAGGAACTCCTCTGGCTGGATGAGCTGATGCCAGAGGAGGAGGAGACCATCCCCGAGAACAGG TCCGAGCCAGAGCACTTGTTCAGTGGAAATGACAGTGAAGATTCAGAACTGATGTATCAGCCCAAGGCTC CAGAAATCAACATCTCTGTGAATTAG
Translation (871 aa):
MKLPGQGDFESSDAHENAHSEEPDSGLGPGPGLNGPSGIDIGESQVSKDPLLFIQLNELLGWPQALEWRE TGRWLLFEEKLDMGAGRWSAPHVPTLELPSLQKLRSLLAEGIVLLDCQAQSLLELVEQVVSGESLSPELR GQLQALLLQRPQHHIQTMGIRPCRESNAFRKASRDEDAPLKHQNPLRQKLPAGAEAAAVLAGELGFLEQP LGAFVRLRNPIVLEPLTEMILPSRFFCLLLGPPTLGRSYHEMGRAAAVLLSDPQFQWSVRRASHLPDLLA ALDAFLQEVTALPPGRWDRTARIPPPKYLPSQHKRFPSKLQEVTSLSRQSAALAEDKHHHGPHTPIPELQ RTGRLFGGLIQDVRRKACWYTSDFLDALHPQCFSAVFYIYLATVTNAITFGGLLGDATEGAQGVLESFLG TAVAGAAFCLMAGQPLTILSSTGPVLVFERLLFSFSRDYSLDYLPFRLWVGIWVTAFCLALVATEASLLV RYFTRFTEEGFCALISLIFIYDAMGKMLNLIRAYPIQRPGSSAYGCFCQYPGTGGNTSEWTSAKLKDTED ILSVPGLVNASFLPPPECIRQGGHPLGPSCHTVPDIAFFSLLLFFTSFLCAIALKHIKNSRFFPSVVRKV LGDFSSVLAILLGCGLDTFLGLATPKLLVPTEFKPTLSGRGWLVSPFGANPWWLSVAAALPALLLSILIF MDQQITAVILNRAEYRLQKGAGFHLDLFCVAVLMLFTSALGLPWYVSATVISLAHIDSLRRESKACIPGE APNFLGIREQRLTGLVVFVLTGVSIFLAPVLKLLGLVAIRKALEWVFSPQELLWLDELMPEEEETIPENR SEPEHLFSGNDSEDSELMYQPKAPEINISVN

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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