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Report for CCDS72332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72332.1 Public Mus musculus X Tfe3 23 108 98 CCDS HistoryNCBI Gene:209446Re-query CCDS DB by CCDS ID:72332.1Re-query CCDS DB by GeneID:209446See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101695.8 ENSMUSP00000099219.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101695.8Link to Ensembl Protein Viewer:ENSMUSP00000099219.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101695Re-query CCDS DB by Protein ID:ENSMUSP00000099219
Original member Current member EBI ENSMUST00000115677.7 ENSMUSP00000111341.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115677.7Link to Ensembl Protein Viewer:ENSMUSP00000111341.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115677Re-query CCDS DB by Protein ID:ENSMUSP00000111341
Original member Current member EBI ENSMUST00000115679.7 ENSMUSP00000111343.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115679.7Link to Ensembl Protein Viewer:ENSMUSP00000111343.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115679Re-query CCDS DB by Protein ID:ENSMUSP00000111343
Original member Current member EBI ENSMUST00000137467.7 ENSMUSP00000134125.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137467.7Link to Ensembl Protein Viewer:ENSMUSP00000134125.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137467Re-query CCDS DB by Protein ID:ENSMUSP00000134125
Original member Current member NCBI NM_001105197.1 NP_001098667.1 Accepted alive Link to Nucleotide Sequence:NM_001105197.1Link to Protein Sequence:NP_001098667.1Re-query CCDS DB by Nucleotide ID:NM_001105197Re-query CCDS DB by Protein ID:NP_001098667Link to BLAST:NP_001098667.1
Original member Current member NCBI NM_001271489.1 NP_001258418.1 Accepted alive Link to Nucleotide Sequence:NM_001271489.1Link to Protein Sequence:NP_001258418.1Re-query CCDS DB by Nucleotide ID:NM_001271489Re-query CCDS DB by Protein ID:NP_001258418Link to BLAST:NP_001258418.1
Original member Current member NCBI NM_001271490.1 NP_001258419.1 Accepted alive Link to Nucleotide Sequence:NM_001271490.1Link to Protein Sequence:NP_001258419.1Re-query CCDS DB by Nucleotide ID:NM_001271490Re-query CCDS DB by Protein ID:NP_001258419Link to BLAST:NP_001258419.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098667.1 467 Q64092-2 467 100% 0 0
NP_001258418.1 467 Q64092-2 467 100% 0 0
NP_001258419.1 467 Q64092-2 467 100% 0 0

Chromosomal Locations for CCDS 72332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7766640 7766855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7767439 7767684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7767893 7767997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7769430 7769547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7770774 7770830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7770995 7771070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7772449 7772596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7773494 7773931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGTCATCTTCTTCATCACGGGTCTTGCTGCGTCAGCAGCTTATGAGGGCCCAGGCTCAGGAACAGGAGA
GGCGTGAGCGGCGGGAACAGGCAGCGGCCGCTCCCTTCCCCAGCCCTGCGCCCGCCTCACCAGCCATCTC
TGTGATTGGCGTGTCTGCTGGTGGCCACACACTGAGTCGTCCACCTCCTGCTCAGGTGCCCAGGGAGGTA
CTCAAGGTTCAGACCCACCTCGAGAACCCTACACGCTACCACCTGCAGCAAGCTCGCCGGCAGCAGGTCA
AACAGTACTTGTCTACCACACTTGGGCCCAAGCTGGCTTCCCAGGCTCTCACCCCACCACCAGGGCCTTC
CAGTGCCCAGCCACTTCCTGCCCCTGAAACTGCTCATGCCACCGGTCCTACAGGCAGTGCTCCTAACAGC
CCCATGGCGCTGCTCACCATTGGGTCCAGCTCAGAAAAGGAGATTGATGATGTCATTGATGAGATCATCA
GCCTGGAGTCCAGTTACAACGATGAGATGCTCAGCTATCTTCCAGGAGGCACTGCAGGGCTGCAGCTCCC
CAGCACGCTGCCGGTGTCTGGAAATCTACTTGATGTGTACAGCAGTCAGGGAGTGGCTACCCCAGCTATC
ACCGTCAGCAATTCCTGTCCAGCTGAGCTGCCTAACATCAAACGCGAGATCTCCGAAACCGAGGCAAAGG
CCCTTTTGAAGGAGCGACAGAAGAAAGACAATCACAACCTAATTGAACGACGCAGGCGATTCAACATTAA
CGATAGGATCAAAGAGCTGGGCACCCTCATCCCCAAGTCCAATGATCCGGAGATGCGCTGGAACAAGGGC
ACCATCCTGAAGGCATCTGTGGATTACATCCGCAAATTACAGAAGGAACAGCAACGCTCCAAAGACCTGG
AGAGCCGGCAGCGGTCCCTGGAACAAGCCAACCGAAGCCTGCAGCTCCGGATTCAGGAGCTAGAACTGCA
GGCCCAGATCCATGGTCTGCCAGTCCCTCCCAACCCAGGACTGCTCTCCCTAACCACGAGTTCGGTCTCT
GACAGCCTCAAGCCAGAACAGCTGGACATTGAGGAGGAGGGCAGGCCTAGCACAACGTTCCATGTATCGG
GAGGACCTGCCCAGAACGCTCCTCCACAACAGCCTCCAGCACCACCTTCGGATGCCCTTCTGGACCTACA
CTTTCCCAGCGACCACTTGGGAGACCTGGGGGACCCCTTCCACCTAGGGCTAGAGGACATTCTGATGGAG
GAGGAGGGGATGGTGGGAGGACTGTCAGGGGGTGCCCTGTCCCCACTGCGGGCTGCTTCTGACCCCCTGC
TTTCTTCAGTATCCCCGGCTGTTTCCAAGGCCAGCAGCCGCCGTAGCAGCTTCAGCATGGAAGAGGAGTC
CTGA

Translation (467 aa):
MSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASPAISVIGVSAGGHTLSRPPPAQVPREV
LKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPSSAQPLPAPETAHATGPTGSAPNS
PMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGGTAGLQLPSTLPVSGNLLDVYSSQGVATPAI
TVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPEMRWNKG
TILKASVDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLRIQELELQAQIHGLPVPPNPGLLSLTTSSVS
DSLKPEQLDIEEEGRPSTTFHVSGGPAQNAPPQQPPAPPSDALLDLHFPSDHLGDLGDPFHLGLEDILME
EEGMVGGLSGGALSPLRAASDPLLSSVSPAVSKASSRRSSFSMEEES


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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