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Report for CCDS28812.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28812.1 Public Mus musculus 17 Hsp90ab1 23 108 98 CCDS HistoryNCBI Gene:15516Re-query CCDS DB by CCDS ID:28812.1Re-query CCDS DB by GeneID:15516See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28812.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024739.13 ENSMUSP00000024739.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024739.13Link to Ensembl Protein Viewer:ENSMUSP00000024739.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024739Re-query CCDS DB by Protein ID:ENSMUSP00000024739
Original member Current member NCBI NM_008302.3 NP_032328.2 Accepted alive Link to Nucleotide Sequence:NM_008302.3Link to Protein Sequence:NP_032328.2Re-query CCDS DB by Nucleotide ID:NM_008302Re-query CCDS DB by Protein ID:NP_032328Link to BLAST:NP_032328.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032328.2 724 P11499 724 100% 0 0

Chromosomal Locations for CCDS 28812.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 45568015 45568124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45568229 45568562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45568858 45569126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45569240 45569387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45569470 45569826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45570258 45570566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45570666 45570799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45571018 45571177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45571413 45571619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45571765 45571911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2175 nt):
ATGCCTGAGGAAGTGCACCATGGAGAGGAGGAGGTGGAGACCTTTGCCTTTCAGGCAGAAATTGCCCAGC
TCATGTCCCTCATCATCAACACTTTCTATTCAAACAAGGAGATTTTCCTCCGCGAGTTGATCTCTAATGC
TTCAGATGCCCTGGACAAGATTCGATATGAGAGCCTGACGGACCCTTCTAAGTTGGACAGTGGGAAAGAG
CTGAAAATTGACATCATCCCCAACCCTCAGGAGCGCACGCTGACTTTGGTGGACACAGGCATTGGCATGA
CCAAGGCTGACCTCATTAATAACCTGGGAACCATTGCTAAGTCTGGCACGAAGGCGTTCATGGAGGCTCT
CCAGGCTGGTGCAGACATCTCCATGATCGGGCAGTTTGGTGTCGGATTCTACTCGGCCTATCTAGTTGCA
GAGAAAGTGGTTGTGATCACGAAGCACAATGATGATGAGCAGTATGCCTGGGAGTCGTCTGCGGGTGGCT
CCTTCACCGTCCGGGCAGACCATGGTGAGCCCATTGGCCGGGGTACCAAAGTGATCCTTCACCTCAAAGA
AGACCAGACAGAGTACTTGGAGGAGAGGAGGGTCAAGGAAGTGGTGAAGAAACATTCGCAGTTCATAGGC
TATCCCATCACCCTCTATTTGGAGAAGGAACGGGAGAAGGAGATCAGTGATGATGAGGCAGAGGAAGAGA
AAGGTGAGAAAGAGGAGGAAGATAAGGAGGATGAGGAGAAGCCTAAGATTGAAGATGTGGGATCCGATGA
GGAAGATGACAGCGGCAAAGACAAGAAAAAGAAAACAAAGAAGATCAAAGAGAAGTACATTGACCAGGAG
GAGCTGAACAAGACAAAGCCTATCTGGACCAGAAACCCGGATGACATCACGCAGGAGGAGTATGGCGAAT
TCTATAAGAGCCTCACCAATGACTGGGAGGACCACTTGGCAGTCAAGCACTTCTCTGTAGAAGGTCAGTT
GGAATTCAGGGCATTGCTCTTCATTCCCCGGCGGGCTCCCTTCGACCTTTTTGAGAACAAGAAGAAGAAG
AACAACATCAAATTGTATGTCCGCCGTGTGTTCATCATGGACAGCTGTGACGAGCTGATACCTGAGTACC
TCAACTTTATCCGCGGTGTGGTTGACTCCGAGGACCTGCCCCTGAACATCTCCCGGGAGATGCTGCAGCA
GAGCAAGATCCTGAAGGTCATCCGCAAGAACATCGTCAAGAAGTGCCTGGAGCTCTTCTCCGAGCTGGCT
GAGGACAAGGAGAACTACAAGAAGTTCTATGAGGCCTTCTCCAAAAATTTAAAGCTTGGAATTCATGAAG
ATTCCACTAACCGACGCCGCCTCTCTGAGCTCCTTCGCTATCACACCTCTCAGTCTGGAGATGAGATGAC
CTCCTTGTCAGAGTATGTGTCTCGCATGAAGGAGACCCAGAAGTCCATCTACTATATCACTGGTGAGAGC
AAAGAGCAAGTGGCCAACTCTGCCTTTGTGGAGCGAGTGCGGAAGCGGGGCTTCGAGGTGGTGTATATGA
CTGAGCCTATTGACGAGTACTGCGTGCAGCAGCTCAAGGAGTTTGATGGGAAGAGCCTGGTCTCAGTGAC
TAAGGAGGGCCTGGAGCTACCAGAGGACGAGGAAGAGAAGAAGAAAATGGAGGAGAGCAAGGCAAAGTTT
GAGAATCTCTGCAAGCTCATGAAGGAGATCTTGGACAAGAAGGTTGAAAAGGTGACAATCTCCAATAGGC
TTGTGTCTTCACCCTGCTGCATTGTGACAAGCACCTATGGCTGGACAGCCAACATGGAACGGATCATGAA
GGCCCAGGCACTGCGAGACAACTCTACAATGGGCTACATGATGGCCAAAAAACACCTGGAGATCAACCCT
GACCACCCCATCGTGGAGACCCTGCGGCAGAAGGCTGAGGCAGACAAAAACGACAAAGCTGTCAAGGACC
TGGTGGTGCTGCTGTTTGAAACTGCTCTGCTCTCCTCTGGTTTCTCACTTGAGGATCCCCAAACCCACTC
CAACCGCATCTACCGCATGATTAAACTAGGCCTGGGCATCGATGAAGATGAGGTCACTGCAGAGGAGCCC
AGTGCTGCTGTTCCTGATGAGATCCCCCCTCTGGAAGGCGATGAGGATGCCTCGCGCATGGAAGAGGTGG
ATTAA

Translation (724 aa):
MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKE
LKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA
EKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIG
YPITLYLEKEREKEISDDEAEEEKGEKEEEDKEDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQE
ELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKK
NNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA
EDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGES
KEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKF
ENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINP
DHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVTAEEP
SAAVPDEIPPLEGDEDASRMEEVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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