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Report for CCDS39327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39327.1 Public Mus musculus 5 Sh2b2 23 108 98 CCDS HistoryNCBI Gene:23921Re-query CCDS DB by CCDS ID:39327.1Re-query CCDS DB by GeneID:23921See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39327.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005188.13 ENSMUSP00000005188.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005188.13Link to Ensembl Protein Viewer:ENSMUSP00000005188.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000005188Re-query CCDS DB by Protein ID:ENSMUSP00000005188
Original member Current member EBI ENSMUST00000196397.4 ENSMUSP00000142398.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196397.4Link to Ensembl Protein Viewer:ENSMUSP00000142398.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196397Re-query CCDS DB by Protein ID:ENSMUSP00000142398
Original member NCBI NM_001302938.1 NP_001289867.1 Updated not alive Link to Nucleotide Sequence:NM_001302938.1Link to Protein Sequence:NP_001289867.1Re-query CCDS DB by Nucleotide ID:NM_001302938Re-query CCDS DB by Protein ID:NP_001289867
Current member NCBI NM_001302938.2 NP_001289867.1 Accepted alive Link to Nucleotide Sequence:NM_001302938.2Link to Protein Sequence:NP_001289867.1Re-query CCDS DB by Nucleotide ID:NM_001302938Re-query CCDS DB by Protein ID:NP_001289867Link to BLAST:NP_001289867.1
Original member NCBI NM_018825.4 NP_061295.2 Updated not alive Link to Nucleotide Sequence:NM_018825.4Link to Protein Sequence:NP_061295.2Re-query CCDS DB by Nucleotide ID:NM_018825Re-query CCDS DB by Protein ID:NP_061295
Current member NCBI NM_018825.5 NP_061295.2 Accepted alive Link to Nucleotide Sequence:NM_018825.5Link to Protein Sequence:NP_061295.2Re-query CCDS DB by Nucleotide ID:NM_018825Re-query CCDS DB by Protein ID:NP_061295Link to BLAST:NP_061295.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289867.1 621 Q9JID9 621 100% 0 0
NP_061295.2 621 Q9JID9 621 100% 0 0

Chromosomal Locations for CCDS 39327.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136218830 136219152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136219642 136219813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136221848 136222056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136224155 136224322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136224405 136224496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136225204 136225295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136227367 136227468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136231653 136232360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGAATGGTGCCACCCCCAGCTCGGCCGCCGCCCCCGCCCCAGTCCCCGACTGGCGGCAATTCTGCGAGC
TGCACGCGCAGGTGGCTGCTGTGGACTTCGCACACAAGTTCTGCCGCTTCCTTCGGGACAACCCGACCTA
CGACACGCCTGACGCTGGGACCTCATTCTCCCGCCACTTTGCAGCCAACTTCTTGGCTGTCTTCAGTGAG
GAGGTGCGCCGCGTGCTGGGGTCAGCAGCCGACACTATGGAACCCGAGCCTGCGGTGACCTCGGTGACAT
CTGCGCTCAAGACTGCAACCTATGGCCACTCCCGCAGCTCCGAGGATGTGTCTGCCCACGCGGCTACCAA
GGCGCGTGTCCGAAAGGGATTCTCGCTGCGTAACATGAGCCTGTGTGTGGTGGATGGAGTGCGCGACCTG
TGGCACCGGCGCTCGTCCCCAGAGCCCGATGGTGGGGCCACCCCCAAGGCCGCCGAGCCTGCGTCGGAGC
CTCGTGACAAATGGACGCGACGCCTGCGGCTAGCACGAACCCTGGCAGCCAAAGTGGAGTTAGTGGACAT
CCAGCGTGAGGGCGCCCTGCGCTTCATGGTGGCAGACGACGCGGCCTCAGGGCCTGGAGGCACTGCGCAG
TGGCAGAAGTGTCGCCTGCTCCTGCGGAGGGCTGTGGCTGGGGAACGTTTCCGCCTGGAGTTCTTCGTGC
CACCCAAGGCTTCCAGACCCAAGGTCAGCATCCCCCTGTCGGCCATCATTGAGGTCCGAACCACTATGCC
CCTGGAAATGCCTGAAAAGGACAACACATTTGTGCTCAAGGTGGAGAACGGAGCAGAATACATCCTGGAA
ACGATAGACTCACTGCAGAAGCACTCGTGGGTGGCTGACATCCAGGGCTGTGTGGATCCTGGGGACAGTG
AGGAAGACACAGGACTGTCTTGTGCACGGGGAGGCTGCCTGGCCAGCCGCGTGGCCTCCTGCAGCTGTGA
GCTCCTGACAGATGCAGACATGCCCCGGCCCCCCGAGACGACGACAGCGGTGGGTGCTGTGGTCACAGCT
CCACATGGCCGAGCTCGTGACACCGTGGGAGAGTCCCTGGCCCACGTTCCCCTGGAGACTTTCCTGCAAA
CCCTGGAGTCTTCAGGTGGTGTCAGTGAGAACAATAACCCAGGGGACGAAGGAGCTGAGCTGGACACCGA
TGCTGAGGCTGAGCTGGAACTTTCCGACTACCCCTGGTTCCATGGGACATTGTCCCGGGTGAAGGCGGCC
CAGCTTGTGCTGGCCGGTGGCCCTCGGAGCCATGGCCTCTTTGTGATCCGCCAAAGTGAGACTAGGCCTG
GGGAGTGTGTGCTGACCTTCAACTTCCAGGGCAAGGCCAAGCACCTCCGCCTTTCTCTGAACGGTCACGG
CCAGTGTCATGTCCAGCACCTGTGGTTCCAGTCCGTGTTTGATATGCTCCGTCACTTCCACACCCACCCC
ATCCCCCTGGAGTCAGGAGGATCGGCTGATATCACCCTAAGAAGCTATGTGCGTGCCCAGGGCCCGCCTC
CTGATCCAGGACCAGCGCCCAACACTGCGGCCCCAGTTCCAGCCTGCTGGACGGAGCCGGCTGGCCAGCA
CTACTTCTCCAGCCTGGCCACGGCCACTTGCCCGCCCGCTTCACCGTCCAATGGCGCTGGAGCTTCGTCT
TCATCCGGCTCATCGTCCTCTGCCACATCCCTGCCCCCACGCCCAGCCGAGGGGCCGCTCAGTGCGCACA
GCCGCAGCAACAGCACAGAGCACCTGCTGGATGCTGCATCTGGAGCCACTGAGGAGCCCACAGAGGCCAC
GCTGGGCCGTGCTCGTGCTGTGGAGAATCAGTACTCCTTTTACTAG

Translation (621 aa):
MNGATPSSAAAPAPVPDWRQFCELHAQVAAVDFAHKFCRFLRDNPTYDTPDAGTSFSRHFAANFLAVFSE
EVRRVLGSAADTMEPEPAVTSVTSALKTATYGHSRSSEDVSAHAATKARVRKGFSLRNMSLCVVDGVRDL
WHRRSSPEPDGGATPKAAEPASEPRDKWTRRLRLARTLAAKVELVDIQREGALRFMVADDAASGPGGTAQ
WQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILE
TIDSLQKHSWVADIQGCVDPGDSEEDTGLSCARGGCLASRVASCSCELLTDADMPRPPETTTAVGAVVTA
PHGRARDTVGESLAHVPLETFLQTLESSGGVSENNNPGDEGAELDTDAEAELELSDYPWFHGTLSRVKAA
QLVLAGGPRSHGLFVIRQSETRPGECVLTFNFQGKAKHLRLSLNGHGQCHVQHLWFQSVFDMLRHFHTHP
IPLESGGSADITLRSYVRAQGPPPDPGPAPNTAAPVPACWTEPAGQHYFSSLATATCPPASPSNGAGASS
SSGSSSSATSLPPRPAEGPLSAHSRSNSTEHLLDAASGATEEPTEATLGRARAVENQYSFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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