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Report for CCDS12317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12317.1 Public Homo sapiens 19 OR7C1 24 110 108 CCDS HistoryNCBI Gene:26664Re-query CCDS DB by CCDS ID:12317.1Re-query CCDS DB by GeneID:26664See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 12317.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000248073.2 ENSP00000248073.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000248073.2Link to Ensembl Protein Viewer:ENSP00000248073.2Re-query CCDS DB by Nucleotide ID:ENST00000248073Re-query CCDS DB by Protein ID:ENSP00000248073
Original member Current member EBI ENST00000642030.1 ENSP00000493026.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642030.1Link to Ensembl Protein Viewer:ENSP00000493026.1Re-query CCDS DB by Nucleotide ID:ENST00000642030Re-query CCDS DB by Protein ID:ENSP00000493026
Original member Current member EBI ENST00000642000.1 ENSP00000493248.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642000.1Link to Ensembl Protein Viewer:ENSP00000493248.1Re-query CCDS DB by Nucleotide ID:ENST00000642000Re-query CCDS DB by Protein ID:ENSP00000493248
Original member Current member EBI ENST00000641666.2 ENSP00000493429.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641666.2Link to Ensembl Protein Viewer:ENSP00000493429.1Re-query CCDS DB by Nucleotide ID:ENST00000641666Re-query CCDS DB by Protein ID:ENSP00000493429
Original member Current member NCBI NM_001370485.4 NP_001357414.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370485.4Link to Protein Sequence:NP_001357414.2Re-query CCDS DB by Nucleotide ID:NM_001370485Re-query CCDS DB by Protein ID:NP_001357414Link to BLAST:NP_001357414.2
Original member Current member NCBI NM_198944.1 NP_945182.1 Accepted alive Link to Nucleotide Sequence:NM_198944.1Link to Protein Sequence:NP_945182.1Re-query CCDS DB by Nucleotide ID:NM_198944Re-query CCDS DB by Protein ID:NP_945182Link to BLAST:NP_945182.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357414.2 320 O76099 320 100% 0 0
NP_945182.1 320 O76099 320 100% 0 0

Chromosomal Locations for CCDS 12317.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 14799174 14800136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGAAACAGGAAATCAAACACATGCCCAAGAATTTCTCCTCCTGGGATTTTCAGCAACGTCAGAGATTC
AGTTCATTCTCTTTGGGCTGTTCCTCTCCATGTACCTAGTCACTTTCACCGGGAACCTGCTCATCATCCT
GGCCATATGCTCAGACTCCCACCTCCACACCCCCATGTACTTCTTCCTCTCCAACCTGTCTTTTGCTGAC
CTCTGTTTTACCTCCACGACTGTCCCAAAGATGTTACTGAATATACTGACACAGAACAAATTCATAACAT
ATGCAGGCTGTCTCAGTCAGATTTTTTTTTTCACTTCATTTGGATGCCTGGACAATTTACTCTTGACCGT
GATGGCCTATGACCGCTTCGTGGCCGTCTGTCACCCCCTGCACTATACGGTCATCATGAACCCCCAGCTC
TGTGGACTGCTGGTTCTGGGGTCCTGGTGCATCAGTGTCATGGGTTCCCTGCTCGAGACCTTGACTGTTT
TGAGGCTGTCCTTCTGCACCGAAATGGAAATTCCACACTTTTTTTGTGATCTACTTGAAGTCCTGAAGCT
CGCCTGTTCTGACACCTTCATTAATAACGTGGTGATATACTTTGCAACTGGCGTCCTGGGTGTGATTTCC
TTCACTGGAATATTTTTCTCTTACTATAAAATTGTTTTCTCTATACTGAGGATTTCCTCAGCTGGGAGAA
AGCACAAAGCGTTTTCCACCTGTGGTTCCCACCTCTCAGTGGTCACCTTGTTCTATGGCACGGGCTTTGG
GGTCTATCTCAGTTCTGCAGCCACACCATCTTCTAGGACAAGTCTGGTGGCCTCAGTGATGTACACCATG
GTCACCCCCATGCTGAACCCCTTCATCTACAGCCTGAGGAACACGGACATGAAGAGGGCCCTGGGGAGAC
TCCTCAGTAGGGCAACATTTTTTAATGGTGACATCACTGCAGGACTTTCATAA

Translation (320 aa):
METGNQTHAQEFLLLGFSATSEIQFILFGLFLSMYLVTFTGNLLIILAICSDSHLHTPMYFFLSNLSFAD
LCFTSTTVPKMLLNILTQNKFITYAGCLSQIFFFTSFGCLDNLLLTVMAYDRFVAVCHPLHYTVIMNPQL
CGLLVLGSWCISVMGSLLETLTVLRLSFCTEMEIPHFFCDLLEVLKLACSDTFINNVVIYFATGVLGVIS
FTGIFFSYYKIVFSILRISSAGRKHKAFSTCGSHLSVVTLFYGTGFGVYLSSAATPSSRTSLVASVMYTM
VTPMLNPFIYSLRNTDMKRALGRLLSRATFFNGDITAGLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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