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Report for CCDS2875.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2875.1 Public Homo sapiens 3 ACTR8 24 110 108 CCDS HistoryNCBI Gene:93973Re-query CCDS DB by CCDS ID:2875.1Re-query CCDS DB by GeneID:93973See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2875.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335754.8 ENSP00000336842.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335754.8Link to Ensembl Protein Viewer:ENSP00000336842.3Re-query CCDS DB by Nucleotide ID:ENST00000335754Re-query CCDS DB by Protein ID:ENSP00000336842
Original member Current member NCBI NM_022899.5 NP_075050.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022899.5Link to Protein Sequence:NP_075050.3Re-query CCDS DB by Nucleotide ID:NM_022899Re-query CCDS DB by Protein ID:NP_075050Link to BLAST:NP_075050.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075050.3 624 Q9H981-1 624 100% 0 0

Chromosomal Locations for CCDS 2875.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 53868719 53868862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53869982 53870145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53871232 53871496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53872384 53872524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53873032 53873127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53874211 53874364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53875948 53876080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53876620 53876713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53877214 53877387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53877647 53877751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53878357 53878467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53879939 53880109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53881979 53882101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1875 nt):
ATGACCCAGGCTGAGAAGGGTGATACGGAGAACGGAAAGGAGAAGGGCGGCGAGAAGGAGAAGGAGCAGC
GCGGCGTGAAGCGGCCCATCGTGCCCGCGCTGGTGCCGGAGTCGCTGCAAGAGCAAATCCAGAGCAACTT
CATCATTGTCATACATCCAGGTTCAACAACTTTAAGGATTGGTCGAGCCACAGACACTCTTCCTGCCAGC
ATTCCTCACGTCATTGCCCGAAGACACAAACAACAAGGGCAGCCCCTATACAAGGACAGTTGGCTCCTAA
GGGAGGGACTAAATAAACCAGAAAGTAATGAACAAAGACAAAATGGCCTTAAAATGGTGGATCAAGCAAT
ATGGTCTAAAAAGATGTCCAATGGTACAAGACGCATTCCTGTGTCCCCTGAACAGGCACGCTCCTACAAT
AAGCAGATGCGACCTGCAATTTTAGATCACTGTTCGGGAAATAAGTGGACAAACACATCTCATCACCCTG
AGTATTTAGTAGGAGAAGAGGCCTTGTATGTTAATCCACTGGACTGTTACAATATTCACTGGCCTATCAG
AAGAGGTCAGTTAAATATTCACCCAGGCCCTGGGGGCTCTCTTACAGCTGTTCTGGCAGATATTGAAGTA
ATATGGTCTCATGCGATACAAAAATACTTGGAAATCCCACTGAAAGATTTAAAGTATTATAGATGTATCT
TGTTAATTCCTGATATCTATAATAAGCAGCATGTGAAAGAACTAGTGAATATGATACTAATGAAGATGGG
TTTTTCAGGGATTGTGGTCCATCAGGAGTCTGTGTGTGCCACCTATGGAAGTGGCTTAAGCAGCACGTGT
ATTGTAGACGTTGGGGACCAGAAGACAAGTGTATGCTGTGTGGAGGATGGGGTGTCTCATCGGAATACTC
GGCTTTGTCTGGCATACGGAGGATCTGATGTGTCAAGATGTTTTTACTGGCTAATGCAGCGAGCTGGGTT
CCCTTACAGAGAATGCCAGTTAACAAATAAAATGGATTGTCTTCTTCTGCAACACCTTAAAGAAACTTTT
TGTCATTTAGATCAGGACATCTCTGGGCTTCAGGACCATGAGTTTCAGATTCGACATCCTGATTCTCCTG
CCCTGCTTTACCAGTTTCGATTAGGAGATGAAAAACTGCAGGCTCCAATGGCTTTGTTTTACCCCGCAAC
TTTTGGAATCGTTGGACAGAAAATGACGACTTTGCAGCACAGATCTCAGGGCGATCCTGAGGATCCTCAC
GATGAACATTACCTGCTGGCCACACAGAGCAAACAAGAACAGTCTGCAAAAGCTACTGCTGACCGAAAGT
CTGCATCCAAACCTATTGGATTTGAAGGGGATCTTCGTGGCCAGTCCTCTGATCTTCCAGAAAGACTCCA
TTCCCAGGAGGTAGATTTGGGGTCTGCACAGGGAGATGGCCTGATGGCCGGCAACGATTCCGAGGAGGCC
CTCACTGCACTGATGTCCAGGAAGACTGCCATCTCGCTGTTTGAAGGAAAAGCCCTGGGCCTGGATAAAG
CCATCCTCCATAGCATAGACTGCTGTTCATCTGACGACACCAAAAAGAAGATGTACAGCTCCATCCTAGT
GGTGGGAGGTGGTTTGATGTTTCATAAAGCTCAAGAATTTCTGCAGCACAGAATTCTCAACAAAATGCCA
CCATCCTTCAGGCGAATTATTGAAAATGTGGATGTGATCACAAGGCCTAAGGACATGGACCCCCGGCTGA
TTGCATGGAAAGGAGGGGCAGTGTTGGCTTGTTTGGATACAACACAGGAACTGTGGATTTATCAGCGAGA
GTGGCAGCGCTTTGGTGTCCGCATGTTACGAGAGCGGGCTGCGTTTGTGTGGTGA

Translation (624 aa):
MTQAEKGDTENGKEKGGEKEKEQRGVKRPIVPALVPESLQEQIQSNFIIVIHPGSTTLRIGRATDTLPAS
IPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMVDQAIWSKKMSNGTRRIPVSPEQARSYN
KQMRPAILDHCSGNKWTNTSHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEV
IWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTC
IVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETF
CHLDQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPH
DEHYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEA
LTALMSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMP
PSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAAFVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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