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Report for CCDS35130.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
35130.2 |
Public |
Homo sapiens |
9 |
OR1L6 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:392390](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:35130.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 9 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 35130.1 |
The coding region has been updated to shorten the N-terminus to one that is more supported by available protein data. This olfactory receptor (OR) gene lacks transcript support, possibly because OR genes are expressed in only a very small fraction of olfactory neurons, and thus, transcript evidence may be difficult to detect for all functional genes. The updated representation is consistent with that of The Human Olfactory Data Explorer (HORDE) database, entry #42-827. |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 35130.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000304720.3 |
ENSP00000304235.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000304720.3](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000304235.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000304720](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000304235](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001004453.3 |
NP_001004453.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001004453.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001004453.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001004453](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001004453](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001004453.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 35130.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (936 nt): ATGGAGATAAAGAACTACAGCAGCAGCACCTCAGGCTTCATCCTCCTGGGCCTCTCTTCCAACCCTCAGC TGCAGAAACCTCTCTTTGCCATCTTCCTCATCATGTACCTGCTCGCTGCGGTGGGGAATGTGCTCATCAT CCCGGCCATCTACTCTGACCCCAGGCTCCACACCCCTATGTACTTTTTTCTCAGCAACTTGTCTTTCATG GATATCTGCTTCACAACAGTCATAGTGCCTAAGATGCTGGTGAATTTTCTATCAGAGACAAAGGTTATCT CCTATGTGGGCTGCCTGGCCCAGATGTACTTCTTTATGGCATTTGGGAACACTGACAGCTACCTGCTGGC CTCTATGGCCATCGACCGGCTGGTGGCCATCTGCAACCCCTTACACTATGATGTGGTTATGAAACCACGG CATTGCCTGCTCATGCTATTGGGTTCTTGCAGCATCTCCCACCTACATTCCCTGTTCCGCGTGCTACTTA TGTCTCGCTTGTCTTTCTGTGCCTCTCACATCATTAAGCACTTTTTCTGTGACACCCAGCCTGTGCTAAA GCTCTCCTGCTCTGACACATCCTCCAGCCAGATGGTGGTGATGACTGAGACCTTAGCTGTCATTGTGACC CCCTTCCTGTGTATCATCTTCTCCTACCTGCGAATCATGGTCACTGTGCTCAGAATCCCCTCTGCAGCCG GGAAGTGGAAGGCCTTCTCTACCTGTGGCTCCCACCTCACTGCAGTAGCCCTTTTCTATGGGAGTATTAT TTATGTCTATTTTAGGCCCCTGTCCATGTACTCAGTGGTTAGGGACCGGGTAGCCACAGTTATGTACACA GTAGTGACACCCATGCTGAACCCTTTCATCTACAGCCTGAGGAACAAAGATATGAAGAGGGGTTTGAAGA AATTACAGGACAGAATTTACCGGTAA
Translation (311 aa): MEIKNYSSSTSGFILLGLSSNPQLQKPLFAIFLIMYLLAAVGNVLIIPAIYSDPRLHTPMYFFLSNLSFM DICFTTVIVPKMLVNFLSETKVISYVGCLAQMYFFMAFGNTDSYLLASMAIDRLVAICNPLHYDVVMKPR HCLLMLLGSCSISHLHSLFRVLLMSRLSFCASHIIKHFFCDTQPVLKLSCSDTSSSQMVVMTETLAVIVT PFLCIIFSYLRIMVTVLRIPSAAGKWKAFSTCGSHLTAVALFYGSIIYVYFRPLSMYSVVRDRVATVMYT VVTPMLNPFIYSLRNKDMKRGLKKLQDRIYR
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