NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54278.1 Public Homo sapiens 19 CEACAM16 24 110 108 CCDS HistoryNCBI Gene:388551Re-query CCDS DB by CCDS ID:54278.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54278.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000405314.2 ENSP00000385576.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405314.2Link to Ensembl Protein Viewer:ENSP00000385576.1Re-query CCDS DB by Nucleotide ID:ENST00000405314Re-query CCDS DB by Protein ID:ENSP00000385576
Original member Current member EBI ENST00000587331.7 ENSP00000466561.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000587331.7Link to Ensembl Protein Viewer:ENSP00000466561.1Re-query CCDS DB by Nucleotide ID:ENST00000587331Re-query CCDS DB by Protein ID:ENSP00000466561
Original member Current member NCBI NM_001039213.4 NP_001034302.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039213.4Link to Protein Sequence:NP_001034302.2Re-query CCDS DB by Nucleotide ID:NM_001039213Re-query CCDS DB by Protein ID:NP_001034302Link to BLAST:NP_001034302.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034302.2 425 Q2WEN9 425 100% 0 0

Chromosomal Locations for CCDS 54278.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44701457 44701493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44703349 44703693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44704018 44704296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44705590 44705868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44707861 44708187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44710496 44710506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGGCGCTGACTGGGTACAGCTGGCTGCTCCTCAGTGCCACATTCCTGAATGTGGGGGCCGAGATCTCTA
TCACCCTGGAGCCTGCCCAGCCGAGCGAAGGGGACAACGTCACGCTGGTCGTCCATGGGCTTTCGGGGGA
ACTGCTCGCCTACAGCTGGTATGCGGGGCCCACACTCAGCGTGTCATACCTGGTGGCCAGCTACATCGTG
AGCACAGGCGATGAGACTCCTGGCCCGGCCCACACGGGGCGGGAGGCTGTGCGCCCCGATGGCAGCCTGG
ACATCCAGGGCATCCTGCCCCGGCACTCAGGCACCTACATCCTGCAGACCTTCAACAGGCAGTTGCAGAC
CGAGGTGGGCTACGGACACGTGCAGGTCCATGAGATCCTGGCCCAGCCCACAGTCTTGGCCAACAGCACA
GCGCTGGTGGAACGTCGAGACACCCTGCGCCTTATGTGCAGCAGCCCCAGCCCCACCGCCGAGGTCCGCT
GGTTCTTCAACGGTGGGGCCCTGCCCGTCGCTCTCCGCCTGGGCCTGTCCCCTGACGGCCGGGTGCTGGC
CAGGCATGGCATCCGCCGGGAGGAGGCCGGCGCCTATCAGTGTGAGGTGTGGAACCCGGTCAGTGTCAGC
CGCAGCGAGCCCATCAACCTGACCGTGTACTTTGGCCCAGAGCGTGTGGCCATCCTCCAGGATTCCACCA
CCCGCACAGGCTGCACCATCAAAGTTGACTTCAACACGTCCCTCACCCTGTGGTGCGTGTCCAGGTCCTG
CCCAGAGCCCGAGTATGTGTGGACCTTCAACGGGCAGGCCCTAAAGAACGGCCAAGACCACCTCAACATC
AGCAGCATGACAGCCGCCCAGGAGGGGACGTACACATGTATTGCGAAGAACACCAAGACCCTGCTATCTG
GATCTGCCTCAGTCGTGGTCAAGCTCTCTGCTGCAGCAGTTGCCACGATGATCGTGCCCGTGCCCACCAA
GCCAACGGAGGGCCAGGACGTAACACTGACCGTGCAGGGCTACCCCAAGGACCTGCTGGTCTACGCCTGG
TACCGCGGGCCTGCCTCCGAGCCCAACCGGCTGCTCAGCCAGCTGCCGTCAGGAACCTGGATTGCAGGCC
CCGCGCACACAGGCCGGGAGGTGGGCTTCCCCAACTGCTCGCTGTTGGTGCAGAAGCTGAACCTCACAGA
CACTGGCCGCTACACACTCAAGACTGTCACAGTGCAGGGCAAGACTGAGACACTGGAAGTGGAGCTGCAG
GTGGCCCCCCTGGGGTAA

Translation (425 aa):
MALTGYSWLLLSATFLNVGAEISITLEPAQPSEGDNVTLVVHGLSGELLAYSWYAGPTLSVSYLVASYIV
STGDETPGPAHTGREAVRPDGSLDIQGILPRHSGTYILQTFNRQLQTEVGYGHVQVHEILAQPTVLANST
ALVERRDTLRLMCSSPSPTAEVRWFFNGGALPVALRLGLSPDGRVLARHGIRREEAGAYQCEVWNPVSVS
RSEPINLTVYFGPERVAILQDSTTRTGCTIKVDFNTSLTLWCVSRSCPEPEYVWTFNGQALKNGQDHLNI
SSMTAAQEGTYTCIAKNTKTLLSGSASVVVKLSAAAVATMIVPVPTKPTEGQDVTLTVQGYPKDLLVYAW
YRGPASEPNRLLSQLPSGTWIAGPAHTGREVGFPNCSLLVQKLNLTDTGRYTLKTVTVQGKTETLEVELQ
VAPLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH