NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4293.1 Public Homo sapiens 5 SH3TC2 24 110 108 CCDS HistoryNCBI Gene:79628Re-query CCDS DB by CCDS ID:4293.1Re-query CCDS DB by GeneID:79628See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4293.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000515425.6 ENSP00000423660.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000515425.6Link to Ensembl Protein Viewer:ENSP00000423660.1Re-query CCDS DB by Nucleotide ID:ENST00000515425Re-query CCDS DB by Protein ID:ENSP00000423660
Original member Current member NCBI NM_024577.4 NP_078853.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024577.4Link to Protein Sequence:NP_078853.2Re-query CCDS DB by Nucleotide ID:NM_024577Re-query CCDS DB by Protein ID:NP_078853Link to BLAST:NP_078853.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078853.2 1288 Q8TF17-1 1288 100% 0 0

Chromosomal Locations for CCDS 4293.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 149004711 149004902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149006881 149007077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149008851 149009001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149010270 149010392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149012584 149012734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149026572 149026752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149026860 149028554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149028677 149028718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149031554 149031687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149038295 149038490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149040604 149040677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149041416 149041617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149042694 149042837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149044533 149044638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149047862 149047989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149052142 149052240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149062971 149063022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3867 nt):
ATGGGTGGCTGCTTCTGCATCCCCAGGGAGCGGAGTCTGACCCGGGGCCCAGGTAAAGAAACTCCTTCCA
AGGATCCAACTGTATCGAGTGAGTGTATAGCCTCATCTGAATACAAGGAAAAATGTTTTCTGCCACAGAA
CATTAATCCAGACCTGACACTCTCCTTCTGTGTAAAGAGCCGCTCCAGGAGGTGTGTAAATGGACCCCTA
CAGGAAGCTGCTCGGAGGCGGCTCTGGGCACTGGAGAATGAGGACCAGGAGGTGCGCATGCTGTTTAAGG
ACCTCTCAGCAAGGTTGGTCAGTATCCAGTCTCAGAGGGCCCAGTTTCTCATCACCTTCAAGACCATGGA
GGAAATCTGGAAGTTCTCCACCTACCTTAATTTAGGCTACGTATCCATGTGTCTAGAACATCTCCTCTTT
GACCACAAGTACTGGCTCAACTGCATATTGGTGGAGGATACAGAGATCCAAGTGTCTGTAGATGATAAAC
ACCTGGAAACAATATACCTGGGACTCCTGATACAGGAAGGCCACTTCTTCTGCAGAGCCCTGTGCTCCGT
GACTCCACCAGCCGAGAAGGAAGGGGAATGCTTGACACTTTGCAAGAATGAGTTAATCTCAGTGAAGATG
GCAGAAGCTGGCTCCGAGTTGGAAGGCGTGTCTTTGGTGACAGGTCAGCGGGGCCTGGTACTGGTGTCAG
CCTTGGAGCCTCTGCCTCTCCCTTTCCACCAGTGGTTCCTAAAGAATTATCCAGGAAGCTGTGGCCTTTC
CAGGAAGAGGGATTGGACAGGCTCCTATCAGATTGGCAGAGGACGCTGTAAGGCCTTGACGGGTTATGAG
CCAGGAGAAAAGGATGAACTGAATTTCTACCAGGGAGAAAGCATTGAGATCATCGGCTTTGTCATACCTG
GGCTTCAGTGGTTCATTGGAAAGTCGACAAGTTCAGGACAAGTGGGCTTTGTCCCCACCAGGAACATAGA
TCCTGATTCTTATTCCCCAATGAGCAGGAACTCTGCCTTTCTCAGTGATGAGGAGAGATGCTCCCTGTTG
GCCCTGGGAAGTGATAAGCAGACTGAGTGTTCCAGCTTCCTCCACACTCTTGCTCGCACTGACATCACAT
CTGTCTACCGGCTCAGTGGGTTTGAATCCATCCAGAATCCTCCAAATGATCTGAGTGCATCCCAGCCTGA
AGGTTTCAAGGAGGTCAGGCCTGGCAGAGCCTGGGAGGAGCATCAGGCCGTGGGGTCCAGACAGTCCAGC
AGCTCTGAGGACTCCAGCCTGGAGGAGGAGCTCCTCTCGGCCACCTCAGACAGCTATCGCCTGCCGGAGC
CTGATGACCTTGATGACCCGGAACTGCTCATGGACCTAAGCACTGGTCAGGAGGAGGAGGCTGAGAACTT
CGCCCCCATATTGGCTTTTCTGGATCATGAGGGTTATGCTGACCACTTTAAGAGTCTCTATGACTTCTCC
TTCTCTTTCCTCACTTCTTCCTTTTATAGCTTCTCTGAGGAGGATGAGTTTGTGGCCTACCTGGAGGCAT
CAAGAAAGTGGGCCAAGAAGAGCCACATGACCTGGGCCCATGCCCGTCTCTGCTTCCTCCTGGGCCGGCT
GAGCATCAGGAAGGTCAAACTCTCTCAGGCCAGGGTGTACTTCGAGGAGGCCATCCACATTCTCAATGGA
GCATTTGAGGACCTATCCTTGGTGGCCACTCTGTACATCAATTTGGCTGCCATCTACCTGAAACAGAGGC
TGAGACATAAAGGCTCCGCCCTGTTGGAAAAGGCAGGTGCCCTGCTGGCCTGCCTGCCTGACCGTGAGTC
TAGTGCCAAGCATGAACTCGACGTGGTGGCCTACGTGCTGCGCCAGGGGATTGTGGTGGGCAGCAGCCCG
CTGGAGGCCAGGGCCTGCTTTCTGGCCATCCGCTTGCTCCTGAGCCTAGGCCGGCACGAGGAGGTCCTGC
CCTTTGCCGAGCGCCTGCAGCTCCTCTCTGGACACCCTCCTGCCTCTGAGGCTGTGGCCAGTGTTTTGAG
TTTTCTGTATGACAAGAAATATCTTCCACACCTTGCAGTGGCCTCTGTCCAGCAACATGGTATCCAGAGT
GCCCAAGGGATGTCTCTTCCTATTTGGCAGGTCCACCTTGTCCTCCAGAACACAACCAAGCTCCTTGGCT
TTCCTTCCCCAGGCTGGGGTGAAGTTTCTGCCTTGGCCTGCCCAATGCTCAGACAGGCCCTGGCTGCCTG
TGAGGAACTAGCAGACCGGAGCACCCAGAGGGCCCTGTGTCTCATCCTTTCCAAAGTGTACCTCGAGCAC
AGGTCTCCTGACGGTGCCATCCACTACCTGAGCCAGGCCTTGGTGCTAGGGCAGCTGCTGGGTGAGCAGG
AATCCTTTGAGTCTTCTCTCTGCCTGGCATGGGCCTATCTCTTAGCCAGCCAGGCCAAGAAGGCTTTGGA
TGTGCTTGAGCCACTGCTATGCTCCCTGAAGGAGACAGAGAGTCTCACTCAAAGGGGAGTCATCTATAAC
CTCCTGGGACTTGCACTCCAAGGTGAAGGCCGGGTGAACAGGGCAGCCAAGAGCTATCTTCGGGCCTTGA
ACAGAGCCCAGGAGGTGGGAGATGTGCATAACCAGGCAGTGGCTATGGCCAATCTTGGCCACCTGAGCCT
TAAGTCCTGGGCTCAGCATCCAGCCAGAAACTATCTCCTGCAGGCTGTACGACTCTATTGTGAACTTCAG
GCCAGTAAGGAGACAGACATGGAATTAGTACAGGTGTTTCTCTGGTTGGCCCAAGTTCTGGTGTCTGGAC
ACCAGCTGACCCATGGCCTTCTTTGTTATGAAATGGCATTGCTGTTTGGCTTAAGGCATCGACATCTAAA
GAGTCAGCTTCAGGCCACCAAATCCCTCTGCCATTTCTACAGCTCTGTGTCCCCAAACCCTGAGGCATGC
ATCACCTACCATGAGCACTGGCTGGCCCTGGCTCAGCAACTCAGGGACCGGGAGATGGAAGGGAGGCTGC
TGGAGTCCCTGGGGCAGCTTTATCGGAACCTAAATACCGCCAGGTCCCTCAGGAGGTCACTCACATGCAT
CAAGGAGAGCCTGCGTATCTTCATTGACCTGGGGGAGACAGACAAGGCTGCTGAGGCCTGGCTTGGGGCG
GGGCGACTCCACTACCTCATGCAGGAAGACGAGCTGGTGGAGCTGTGCCTGCAGGCAGCCATCCAGACAG
CCCTGAAGTCAGAGGAGCCTTTGCTGGCTCTCAAACTTTATGAAGAAGCAGGTGATGTGTTCTTCAATGG
GACCCGCCACAGGCATCATGCAGTGGAGTACTACCGAGCTGGAGCTGTTCCTTTAGCAAGGAGGTTGAAG
GCGGTGAGAACTGAGCTCCGGATTTTCAATAAGCTGACAGAGCTGCAGATTAGCCTCGAAGGCTATGAGA
AGGCTTTGGAATTTGCCACCCTGGCCGCCAGGCTCAGCACAGTCACAGGAGATCAGAGGCAAGAGCTGGT
GGCCTTTCACCGCCTGGCTACAGTGTACTACTCCCTGCACATGTATGAGATGGCTGAGGACTGCTACCTG
AAGACCCTGTCCCTCTGTCCACCATGGCTGCAGAGTCCCAAGGAGGCCCTGTACTATGCCAAGGTGTATT
ATCGCCTGGGCAGACTCACCTTCTGCCAGCTGAAGGATGCCCATGATGCCACTGAGTACTTCCTTCTGGC
CCTGGCAGCAGCGGTCCTGCTGGGTGATGAGGAGCTTCAGGACACCATTAGGAGCAGGCTGGACAACATC
TGCCAGAGCCCCCTGTGGCACAGCAGGCCCTCCGGGTGCTCCTCAGAGAGGGCGCGGTGGCTGAGTGGTG
GTGGCCTGGCCCTCTGA

Translation (1288 aa):
MGGCFCIPRERSLTRGPGKETPSKDPTVSSECIASSEYKEKCFLPQNINPDLTLSFCVKSRSRRCVNGPL
QEAARRRLWALENEDQEVRMLFKDLSARLVSIQSQRAQFLITFKTMEEIWKFSTYLNLGYVSMCLEHLLF
DHKYWLNCILVEDTEIQVSVDDKHLETIYLGLLIQEGHFFCRALCSVTPPAEKEGECLTLCKNELISVKM
AEAGSELEGVSLVTGQRGLVLVSALEPLPLPFHQWFLKNYPGSCGLSRKRDWTGSYQIGRGRCKALTGYE
PGEKDELNFYQGESIEIIGFVIPGLQWFIGKSTSSGQVGFVPTRNIDPDSYSPMSRNSAFLSDEERCSLL
ALGSDKQTECSSFLHTLARTDITSVYRLSGFESIQNPPNDLSASQPEGFKEVRPGRAWEEHQAVGSRQSS
SSEDSSLEEELLSATSDSYRLPEPDDLDDPELLMDLSTGQEEEAENFAPILAFLDHEGYADHFKSLYDFS
FSFLTSSFYSFSEEDEFVAYLEASRKWAKKSHMTWAHARLCFLLGRLSIRKVKLSQARVYFEEAIHILNG
AFEDLSLVATLYINLAAIYLKQRLRHKGSALLEKAGALLACLPDRESSAKHELDVVAYVLRQGIVVGSSP
LEARACFLAIRLLLSLGRHEEVLPFAERLQLLSGHPPASEAVASVLSFLYDKKYLPHLAVASVQQHGIQS
AQGMSLPIWQVHLVLQNTTKLLGFPSPGWGEVSALACPMLRQALAACEELADRSTQRALCLILSKVYLEH
RSPDGAIHYLSQALVLGQLLGEQESFESSLCLAWAYLLASQAKKALDVLEPLLCSLKETESLTQRGVIYN
LLGLALQGEGRVNRAAKSYLRALNRAQEVGDVHNQAVAMANLGHLSLKSWAQHPARNYLLQAVRLYCELQ
ASKETDMELVQVFLWLAQVLVSGHQLTHGLLCYEMALLFGLRHRHLKSQLQATKSLCHFYSSVSPNPEAC
ITYHEHWLALAQQLRDREMEGRLLESLGQLYRNLNTARSLRRSLTCIKESLRIFIDLGETDKAAEAWLGA
GRLHYLMQEDELVELCLQAAIQTALKSEEPLLALKLYEEAGDVFFNGTRHRHHAVEYYRAGAVPLARRLK
AVRTELRIFNKLTELQISLEGYEKALEFATLAARLSTVTGDQRQELVAFHRLATVYYSLHMYEMAEDCYL
KTLSLCPPWLQSPKEALYYAKVYYRLGRLTFCQLKDAHDATEYFLLALAAAVLLGDEELQDTIRSRLDNI
CQSPLWHSRPSGCSSERARWLSGGGLAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH