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Report for CCDS48221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48221.1 Public Mus musculus 1 Prdm14 23 108 98 CCDS HistoryNCBI Gene:383491Re-query CCDS DB by CCDS ID:48221.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48221.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047577.6 ENSMUSP00000044245.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047577.6Link to Ensembl Protein Viewer:ENSMUSP00000044245.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047577Re-query CCDS DB by Protein ID:ENSMUSP00000044245
Original member NCBI NM_001081209.2 NP_001074678.2 Updated not alive Link to Nucleotide Sequence:NM_001081209.2Link to Protein Sequence:NP_001074678.2Re-query CCDS DB by Nucleotide ID:NM_001081209Re-query CCDS DB by Protein ID:NP_001074678
Current member NCBI NM_001081209.3 NP_001074678.2 Accepted alive Link to Nucleotide Sequence:NM_001081209.3Link to Protein Sequence:NP_001074678.2Re-query CCDS DB by Nucleotide ID:NM_001081209Re-query CCDS DB by Protein ID:NP_001074678Link to BLAST:NP_001074678.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074678.2 561 E9Q3T6 561 100% 0 0

Chromosomal Locations for CCDS 48221.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 13114260 13114487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13115780 13115881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13118763 13118965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13122361 13122631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13124363 13124520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13124619 13124672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13125166 13125835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGGCCTTACCGCCCTCTGGTGAGACCCAGTCCCAGGACAAGGCGAACTACCTGCCCCAGAGCAACCCTC
ACCACCTGACTACCTACTACGCGCATGCCCCAGGCTACAGTCACTTTAGGAACCTCGCCACCACCGAGGA
GGAGTTTCAACCTTGGAAACTGGCAGCTGCAGTGCTTGAGTCCCAGGCGATGGCCCCTCTTGATGCTTTT
CGGATGACTGCTCCCTTGTTGAACCCGGGTCTGGCTGTTCAGAGCGAGCCGCTCTACAATCTGCCCTGGT
ACAAATTGTCACCATGGAACCGAATTCCTCAATTCACTCCCGAAGTACCACGATTTCTAGACAGCACTGA
GCATAGGAGCAGCGGTTCCAGCAACCAAAATTTGGTCCTCGGCGGCGGCGGTGGCCAAATCAGTGGTCAG
AGGTGGGAAGCTGAAAATTTACTTCTGCCATCCCCGGTAATTGCTTCCCTACTACCTGATGGAATTAAGT
CGTCCCAGTCAATATCTGTCCCCCAAACCTTGAATCAAGAGGGGAAGCTGCCGTTTTGCGGCTTCAACTT
CACAGAGGAGGAACTGAGCTTCGTTCTGTATGGAGCCATCGCTAGTCCGGAGCACCCAACCGACTTACAG
CATGCAATTTCAGGCATCCTGGTTCCCACAGAGAGTTCTGGGTCTAATCATCTTCATAAAACCCTGGACA
AAGACTCCCTCCAGCTTCCGGAAGGTCTCTGCCTCATGCAGACCTCATTTGGTGATGTGCCACACTTTGG
CGTGTTCTGCAGCGACTTCATTGCCAAAGGAGTGAGATTTGGACCCTTTCGAGGTAGAGTGGTCAATGCC
AGCGAAGTGAAGGCACACAGGGACAACTCTCGGATGTGGGAAATTTTTGAAGATGGTCACCTGAGCCATT
TTATCGACGGCAAAGGTTCTGGGAACTGGATGTCCTATGTCAACTGTGCTCGGTTCCCCAAGGAGCAGAA
CCTGCTGGCCGTGCAGCACCAAGGGCAGATATTTTATGAGAGTTGTAGAGACATCCAGCGGAACCAGGAA
CTGCTTGTGTGGTACGGAAATGGCTATGAGAAGTTCCTGGGCGTTCCCATGAACCTCCGTGTCACTGAGC
AAGGAGGCCAGCAGCTGTCTGAGTCCTCTGAAGAGTCTGCAGAAGGTTACAGATGTGAACGCTGTGGAAA
GGTGTTTACCTACAAATACTACAGAGATAAGCACCTGAAGTACACGCCCTGTGTGGACAAGGGGGACAGG
AAGTTTCCGTGTTCTCTCTGCCAAAGATCCTTTGAAAAGCGCGACCGCCTCCGGATCCATATTCTTCACG
TCCATGAGAGGCACCGGCCCTACCTGTGTTCAACCTGTGGGAAAAGTTTTTCTCAGTCTTCCAGCCTGAA
CAAGCACATGAGAGTCCACTCTGGAGACAGGCCATACCAGTGCGTGTACTGTACAAAGAAGTTCACTGCC
TCCAGCATACTCCGAACACACATCAGACAGCACTCAGGAGAGAAGCCCTTCAAGTGCAAGCATTGTGGTA
AAGCCTTTGCATCTCATGCTGCCCACGACAGCCACGTCCGGCGCTCACACAAGGACAATGGCCGTAGCTC
CTGCGATATTTGTGGGAAAGGCTTCCTGGATCAAGAGGCTTTCTATGCCCACATGAGGCTTCATAAAACC
TGCTAG

Translation (561 aa):
MALPPSGETQSQDKANYLPQSNPHHLTTYYAHAPGYSHFRNLATTEEEFQPWKLAAAVLESQAMAPLDAF
RMTAPLLNPGLAVQSEPLYNLPWYKLSPWNRIPQFTPEVPRFLDSTEHRSSGSSNQNLVLGGGGGQISGQ
RWEAENLLLPSPVIASLLPDGIKSSQSISVPQTLNQEGKLPFCGFNFTEEELSFVLYGAIASPEHPTDLQ
HAISGILVPTESSGSNHLHKTLDKDSLQLPEGLCLMQTSFGDVPHFGVFCSDFIAKGVRFGPFRGRVVNA
SEVKAHRDNSRMWEIFEDGHLSHFIDGKGSGNWMSYVNCARFPKEQNLLAVQHQGQIFYESCRDIQRNQE
LLVWYGNGYEKFLGVPMNLRVTEQGGQQLSESSEESAEGYRCERCGKVFTYKYYRDKHLKYTPCVDKGDR
KFPCSLCQRSFEKRDRLRIHILHVHERHRPYLCSTCGKSFSQSSSLNKHMRVHSGDRPYQCVYCTKKFTA
SSILRTHIRQHSGEKPFKCKHCGKAFASHAAHDSHVRRSHKDNGRSSCDICGKGFLDQEAFYAHMRLHKT
C


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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