NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2191.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2191.1 Public Homo sapiens 2 RBM43 24 110 108 CCDS HistoryNCBI Gene:375287Re-query CCDS DB by CCDS ID:2191.1Re-query CCDS DB by GeneID:375287See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2191.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331426.6 ENSP00000331211.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331426.6Link to Ensembl Protein Viewer:ENSP00000331211.5Re-query CCDS DB by Nucleotide ID:ENST00000331426Re-query CCDS DB by Protein ID:ENSP00000331211
Original member Current member NCBI NM_198557.3 NP_940959.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198557.3Link to Protein Sequence:NP_940959.1Re-query CCDS DB by Nucleotide ID:NM_198557Re-query CCDS DB by Protein ID:NP_940959Link to BLAST:NP_940959.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940959.1 357 Q6ZSC3 357 100% 0 0

Chromosomal Locations for CCDS 2191.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 151250906 151251664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151252755 151252855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151255533 151255743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151261725 151261727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGCATCAGTTTTGAATGTCAAGGAATCCAAAGCTCCTGAAAGAACGGTTGTAGTTGCTGGTCTTCCAG
TTGACCTTTTTAGTGATCAATTATTGGCCGTATTAGTGAAGAGCCACTTCCAAGACATTAAGAATGAGGG
CGGAGATGTTGAAGATGTGATATATCCGACAAGAACCAAGGGAGTTGCATATGTAATATTCAAAGAAAAA
AAAGTTGCAGAGAATGTCATCAGACAAAAGAAACACTGGCTAGCAAGGAAGACTAGACATGCTGAACTCA
CAGTCTCTCTCAGAGTCTCTCATTTTGGTGACAAGATCTTCAGCTCTGTAAATGCCATCCTTGATCTTTC
TGTTTTTGGAAAAGAAGTTACTCTAGAAACTCTGGTAAAAGACCTGAAAAAAAAAATCCCGAGTTTAAGC
TTCAGTCCTTTGAAACCCAATGGAAGAATCTCCGTGGAAGGATCATTTCTGGCTGTCAAGAGGCTCAGAG
AATCTTTGCTAGCAAGAGCATGTTCTCTCTTAGAAAAAGACAGAAATTTTACCAGTGAGGAGAGAAAGTG
GAATAGACAAAATCCCCAGAGGAATCTACAGAGAAGTAATAACTCTTTGGCATCAGTCAGGACCTTAGTA
CCTGAGACTGCTAGAAGTGGAGAAATGCTTGTGCTTGACACAGATGTTTTTCTTTACCTGAAACACAAGT
GTGGATCTTATGAAAGCACACTGAAAAAATTCCACATTCTGAGTCAGGAGAAAGTGGATGGTGAAATCAC
CACAATTTGTCTAAAAAGCATTCAAGTTGGTTCTCAGCCAAACAATGCAAAACATGTAAAAGAGCTCATT
GAGGAATGGTCACATGCTCTTTACTTAAAGCTTAGAAAAGAGACATTTATTTTGGAAGGAAAGGAAAATA
GAGAGAAAAGAATGATCAAAAGGGCATGTGAACAATTAAGTTCGAGATACCTTGAAGTCCTGATTAACCT
TTATAGGACACACATTGACATTATAGGATCTTCTTCTGACACTTACCTGTTTAAAAAAGGGGTCATGAAA
TTAATAGGGCAAAAGGTTAGTTAA

Translation (357 aa):
MASVLNVKESKAPERTVVVAGLPVDLFSDQLLAVLVKSHFQDIKNEGGDVEDVIYPTRTKGVAYVIFKEK
KVAENVIRQKKHWLARKTRHAELTVSLRVSHFGDKIFSSVNAILDLSVFGKEVTLETLVKDLKKKIPSLS
FSPLKPNGRISVEGSFLAVKRLRESLLARACSLLEKDRNFTSEERKWNRQNPQRNLQRSNNSLASVRTLV
PETARSGEMLVLDTDVFLYLKHKCGSYESTLKKFHILSQEKVDGEITTICLKSIQVGSQPNNAKHVKELI
EEWSHALYLKLRKETFILEGKENREKRMIKRACEQLSSRYLEVLINLYRTHIDIIGSSSDTYLFKKGVMK
LIGQKVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH