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Report for CCDS8444.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8444.1 Public Homo sapiens 11 VWA5A 24 110 108 CCDS HistoryNCBI Gene:4013Re-query CCDS DB by CCDS ID:8444.1Re-query CCDS DB by GeneID:4013See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8444.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392748.5 ENSP00000376504.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392748.5Link to Ensembl Protein Viewer:ENSP00000376504.1Re-query CCDS DB by Nucleotide ID:ENST00000392748Re-query CCDS DB by Protein ID:ENSP00000376504
Original member Current member EBI ENST00000456829.7 ENSP00000407726.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000456829.7Link to Ensembl Protein Viewer:ENSP00000407726.2Re-query CCDS DB by Nucleotide ID:ENST00000456829Re-query CCDS DB by Protein ID:ENSP00000407726
Original member Current member NCBI NM_001130142.2 NP_001123614.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001130142.2Link to Protein Sequence:NP_001123614.1Re-query CCDS DB by Nucleotide ID:NM_001130142Re-query CCDS DB by Protein ID:NP_001123614Link to BLAST:NP_001123614.1
Original member Current member NCBI NM_014622.5 NP_055437.2 Accepted alive Link to Nucleotide Sequence:NM_014622.5Link to Protein Sequence:NP_055437.2Re-query CCDS DB by Nucleotide ID:NM_014622Re-query CCDS DB by Protein ID:NP_055437Link to BLAST:NP_055437.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123614.1 786 O00534-1 786 100% 0 0
NP_055437.2 786 O00534-1 786 100% 0 0

Chromosomal Locations for CCDS 8444.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 124117512 124117554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124117673 124117875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124118189 124118411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124118533 124118708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124118975 124119089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124122960 124123129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124123366 124123454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124123660 124123804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124124237 124124316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124134920 124135034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124136129 124136293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124136574 124136674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124137015 124137268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124141598 124141741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124142442 124142572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124145237 124145363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124145866 124145945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2361 nt):
ATGGTGCACTTCTGTGGCCTACTCACCCTCCACCGGGAGCCAGTGCCGCTGAAGAGTATCTCTGTGAGCG
TGAACATTTACGAGTTTGTGGCTGGTGTGTCTGCAACTTTGAACTACGAGAATGAGGAGAAAGTTCCTTT
GGAGGCCTTCTTTGTGTTCCCCATGGATGAAGACTCTGCTGTTTACAGCTTTGAGGCCTTGGTGGATGGG
AAGAAAATTGTAGCAGAATTACAAGACAAGATGAAGGCCCGCACCAACTATGAGAAAGCCATCTCCCAGG
GCCACCAGGCCTTCTTATTGGAGGGGGACAGCAGCTCCAGGGATGTCTTCTCTTGCAATGTGGGTAACCT
CCAACCTGGGTCGAAGGCGGCAGTCACCCTGAAGTATGTGCAGGAGCTGCCTCTGGAAGCAGATGGGGCT
CTGCGCTTTGTGCTCCCAGCTGTCCTGAATCCTAGATACCAGTTCTCTGGGTCGTCTAAGGACAGTTGCC
TTAATGTGAAGACTCCTATAGTCCCTGTGGAGGACCTGCCCTACACACTCAGCATGGTCGCCACCATAGA
TTCCCAGCATGGCATTGAGAAGGTCCAATCCAACTGCCCCTTGAGTCCTACCGAGTACCTAGGAGAGGAC
AAGACTTCTGCTCAGGTTTCCCTGGCTGCTGGACACAAGTTTGATCGGGACGTGGAACTCCTGATTTACT
ACAATGAGGTGCATACCCCCAGCGTGGTTTTGGAGATGGGGATGCCTAACATGAAGCCAGGTCATTTGAT
GGGAGATCCATCTGCAATGGTGAGTTTCTATCCAAATATCCCAGAAGATCAACCATCAAATACCTGTGGA
GAGTTTATCTTTCTCATGGACCGCTCGGGAAGTATGCAGAGCCCCATGAGTAGCCAGGATACATCTCAGC
TGCGAATACAGGCAGCCAAGGAAACACTGATTTTGCTGCTGAAGAGTTTACCTATAGGCTGTTATTTCAA
CATCTATGGATTTGGCTCTTCCTATGAGGCATGCTTTCCGGAGAGTGTGAAGTACACTCAGCAAACAATG
GAGGAGGCTCTGGGGAGAGTGAAGCTTATGCAGGCCGACCTAGGGGGCACTGAAATCTTGGCACCACTCC
AGAACATTTACAGGGGACCCTCCATCCCAGGCCACCCCCTACAGCTTTTTGTCTTTACAGATGGAGAAGT
TACAGACACGTTTAGTGTAATTAAAGAAGTTAGGATCAACAGACAGAAACACAGGTGTTTCTCATTTGGT
ATTGGAGAAGGCACCTCCACCAGCCTAATAAAAGGTATTGCCCGGGCATCAGGGGGCACCTCAGAATTTA
TCACAGGCAAAGACAGGATGCAGTCCAAGGCTCTCAGGACTCTGAAACGCTCTCTGCAGCCTGTGGTAGA
GGATGTCTCTCTGAGCTGGCATTTGCCTCCTGGTCTGTCTGCTAAAATGCTTTCCCCAGAACAGACTGTC
ATCTTTAGGGGTCAGAGATTAATCAGCTATGCCCAGCTGACCGGGAGGATGCCAGCAGCAGAGACAACAG
GAGAAGTATGCCTCAAATATACACTCCAGGGCAAGACTTTTGAGGATAAGGTGACATTTCCTCTACAACC
CAAGCCTGATGTCAACCTCACCATTCACCGCCTTGCTGCCAAGTCCTTGCTCCAGACCAAGGACATGGGC
CTCAGGGAGACTCCAGCAAGTGATAAAAAAGATGCATTGAACCTTAGCCTTGAGTCTGGTGTCATAAGCT
CCTTCACAGCTTTCATTGCTATCAATAAGGAGCTCAACAAGCCGGTTCAGGGGCCTCTGGCTCATAGGGA
CGTCCCAAGGCCAATTCTGTTGGGTGCTTCTGCCCCATTGAAGATAAAATGCCAATCAGGTTTTCGAAAG
GCCTTACACTCTGACCGTCCTCCTTCTGCATCTCAGCCCAGAGGGGAACTTATGTGTTATAAGGCCAAGA
CATTCCAGATGGACGATTACAGTCTCTGTGGGTTGATAAGTCACAAGGACCAGCACAGTCCAGGCTTTGG
AGAGAATCACCTTGTGCAGCTGATTTACCACCAAAATGCAAATGGTTCCTGGGATCTGAATGAAGATCTA
GCCAAGATCCTAGGTATGAGTTTGGAAGAAATAATGGCTGCACAGCCTGCCGAGCTTGTGGATTCCTCAG
GCTGGGCCACCATCCTGGCCGTGATCTGGCTGCACAGCAATGGTAAGGACTTGAAGTGTGAATGGGAGCT
TCTGGAAAGGAAGGCCGTGGCCTGGATGCGTGCCCATGCAGGCTCCACCATGCCTTCGGTTGTGAAAGCT
GCTATTACTTTCCTGAAGTCATCTGTGGATCCTGCTATCTTTGCCTTTTGA

Translation (786 aa):
MVHFCGLLTLHREPVPLKSISVSVNIYEFVAGVSATLNYENEEKVPLEAFFVFPMDEDSAVYSFEALVDG
KKIVAELQDKMKARTNYEKAISQGHQAFLLEGDSSSRDVFSCNVGNLQPGSKAAVTLKYVQELPLEADGA
LRFVLPAVLNPRYQFSGSSKDSCLNVKTPIVPVEDLPYTLSMVATIDSQHGIEKVQSNCPLSPTEYLGED
KTSAQVSLAAGHKFDRDVELLIYYNEVHTPSVVLEMGMPNMKPGHLMGDPSAMVSFYPNIPEDQPSNTCG
EFIFLMDRSGSMQSPMSSQDTSQLRIQAAKETLILLLKSLPIGCYFNIYGFGSSYEACFPESVKYTQQTM
EEALGRVKLMQADLGGTEILAPLQNIYRGPSIPGHPLQLFVFTDGEVTDTFSVIKEVRINRQKHRCFSFG
IGEGTSTSLIKGIARASGGTSEFITGKDRMQSKALRTLKRSLQPVVEDVSLSWHLPPGLSAKMLSPEQTV
IFRGQRLISYAQLTGRMPAAETTGEVCLKYTLQGKTFEDKVTFPLQPKPDVNLTIHRLAAKSLLQTKDMG
LRETPASDKKDALNLSLESGVISSFTAFIAINKELNKPVQGPLAHRDVPRPILLGASAPLKIKCQSGFRK
ALHSDRPPSASQPRGELMCYKAKTFQMDDYSLCGLISHKDQHSPGFGENHLVQLIYHQNANGSWDLNEDL
AKILGMSLEEIMAAQPAELVDSSGWATILAVIWLHSNGKDLKCEWELLERKAVAWMRAHAGSTMPSVVKA
AITFLKSSVDPAIFAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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