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Report for CCDS38271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38271.1 Public Mus musculus 2 4921509C19Rik 23 108 98 CCDS HistoryNCBI Gene:381393Re-query CCDS DB by CCDS ID:38271.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38271.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080132.2 ENSMUSP00000079030.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080132.2Link to Ensembl Protein Viewer:ENSMUSP00000079030.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080132Re-query CCDS DB by Protein ID:ENSMUSP00000079030
Original member Current member NCBI NM_198655.2 NP_941057.1 Accepted alive Link to Nucleotide Sequence:NM_198655.2Link to Protein Sequence:NP_941057.1Re-query CCDS DB by Nucleotide ID:NM_198655Re-query CCDS DB by Protein ID:NP_941057Link to BLAST:NP_941057.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941057.1 640 Q8C0X8 640 100% 0 0

Chromosomal Locations for CCDS 38271.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 151471323 151471356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 151471868 151473756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGAAGAGATGGCAAGCGTGTCAGGACCTCAGGTCTAACACCTTTGAAGACGCTGCCTTAACAGAACACT
ATGAAATATTAACAACCCTTGGCCAAGGAACATTTGGGGAAGTAAAACTGGCGAGCCATCTCGTCACCCA
GACTAAGGTAGCAATAAAAATCCTCCCCAAAAGCAGGAAAAACTCCCTTGTCCAACCCGAAATTGAAATC
ATGAAATCTCTTGACCATCCCCATATTATTAAACTTTTACACATAATCGACACCACCAGAAACATTTTCA
TCGTTCTGGAGCATGCTGTGGGAGGAGAGCTGATGAGCAGAATTGAAGAGTTTGGCTATCTAGCAGAGGT
GGAGTGCCACAGGCTGTTTAAACAGCTGGTCTATGCCCTCCAGTATTGTCATGAGAAAGGGATTGTCCAC
AGGGATTTAAAGCCAGAAAACATTTTATTGGACCACAGAGGAAATGTAAAGCTTACTGATTTTGGATTGG
GCACCAAGATAATCATGGGCCAGAAGCTGGTCACGTTCTGTGGAACCCTCCCTTACTGTGCCCCAGAACT
GTTTGAAGATAGAGGGTATGATGGCCGGGCCACTGATGTCTGGAGCTTGGGGGTTGTGCTTTATTTTATG
GCCACAGGGTGCCTTCCTTTCAATGGATATAGCTATGAAGCAATAAAGCAGAAGATCATTGCAGGAAAGT
ACCCTAGGAGTTTCAGTCTGTCACCAGAACTTTGGGAGGTGATAGCCAAGTTGCTAACTGTCAACCCTGG
AGAGAGGCCAACAGTCCATGACATTGCCAGATTTAAGTGGCTAAAGCCTGACAACGAAGCTTCTCCCGCT
TCTTTGGGAGAGAACATTGAGAGTCACCCGGACCCCTCTATAATGGTGCTCATGGGTGTCATGGGATACA
ATCCAGGAGAGATAAGAGAAAGTTTGCGGGAGAAAAAATTCGACCAGGTGATGGCTACTTATTTAATGCT
CAAACAACAGTCAGCCTGGGAAAATAAGACAACAAAAAAACCAGATCCAAGGCTATGTGATAGAATGTTG
AGAAGCACAGAGCCAACCATAAAAAACCAAACATCTGTAAGGAGGGCATCTAGTGTGCCTACACATTCCA
CCTTCAGTTTGCCCAATGAATCAGAAAGTCTTGAAAAGGGAAAGAGAACTACAATGAGCCACTCTATGCC
ACCCACGAGGAACTGCTTCAACGAGGAGACAACTCCACTCCACAGTATCTGCCCCCAGCTTGTCCAGAAG
GCTCACTACAGGAGGAGCATCTGGGGGGAGACAGAGATCAGTGACACTTCAGAAGAAAGCTCTACTGGAG
AGTCTTTGGAACATCCATCACTGAAAATCCACACCCTCCAGACATCCATGGGTGTGTCCAAAGCTGGATC
TACCTATTCAAAGAGCAAGGGGTCTTCACAGTGTGTTTCTTCTCATCATACCTCTGTGGAAGAAGACCAG
TGTGAGGGCACCAACATATCCAGAGAGATCAACCCACCTCTTTCACCAGTCTCGCCTCAGGAGAACCTCA
TGGGACAGCTCCACATTGTGACTACAGCTGGGTCAATGGACATCATGAACACACAAGTTACATCACCTCC
ATTCTCCAGGAAGGAGGCCAAGGGTGAGGGTCCTGCTCTACAACAGAGAGAGTCCAGACCATCCTCCCCA
AATACACTCCAGGGACACCTCCATGGCAGGCGTCAGACTGTGCCCCAGGCCCCCTTTCAAAGACGGGTCT
GGAGGACCCTGAGGAACGGTTTAATCAGAGGCCTGCGAACTTTATGTTGCTGCCTGCCAATCGAAAGGAG
AGTGCACCCGACCAACAACAGAGACCTGGCTGTGAGTCAAAAGAGCCATGGAGGTAGCCATGGTATCAGA
GCATTTAGAGGCACTGTGCTCCCTGAAAAATGA

Translation (640 aa):
MKRWQACQDLRSNTFEDAALTEHYEILTTLGQGTFGEVKLASHLVTQTKVAIKILPKSRKNSLVQPEIEI
MKSLDHPHIIKLLHIIDTTRNIFIVLEHAVGGELMSRIEEFGYLAEVECHRLFKQLVYALQYCHEKGIVH
RDLKPENILLDHRGNVKLTDFGLGTKIIMGQKLVTFCGTLPYCAPELFEDRGYDGRATDVWSLGVVLYFM
ATGCLPFNGYSYEAIKQKIIAGKYPRSFSLSPELWEVIAKLLTVNPGERPTVHDIARFKWLKPDNEASPA
SLGENIESHPDPSIMVLMGVMGYNPGEIRESLREKKFDQVMATYLMLKQQSAWENKTTKKPDPRLCDRML
RSTEPTIKNQTSVRRASSVPTHSTFSLPNESESLEKGKRTTMSHSMPPTRNCFNEETTPLHSICPQLVQK
AHYRRSIWGETEISDTSEESSTGESLEHPSLKIHTLQTSMGVSKAGSTYSKSKGSSQCVSSHHTSVEEDQ
CEGTNISREINPPLSPVSPQENLMGQLHIVTTAGSMDIMNTQVTSPPFSRKEAKGEGPALQQRESRPSSP
NTLQGHLHGRRQTVPQAPFQRRVWRTLRNGLIRGLRTLCCCLPIERRVHPTNNRDLAVSQKSHGGSHGIR
AFRGTVLPEK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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