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Report for CCDS29091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29091.1 Public Mus musculus 18 Garem1 23 108 98 CCDS HistoryNCBI Gene:381126Re-query CCDS DB by CCDS ID:29091.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29091.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049260.6 ENSMUSP00000048914.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049260.6Link to Ensembl Protein Viewer:ENSMUSP00000048914.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000049260Re-query CCDS DB by Protein ID:ENSMUSP00000048914
Original member NCBI NM_001033445.2 NP_001028617.2 Updated not alive Link to Nucleotide Sequence:NM_001033445.2Link to Protein Sequence:NP_001028617.2Re-query CCDS DB by Nucleotide ID:NM_001033445Re-query CCDS DB by Protein ID:NP_001028617
Current member NCBI NM_001033445.3 NP_001028617.2 Accepted alive Link to Nucleotide Sequence:NM_001033445.3Link to Protein Sequence:NP_001028617.2Re-query CCDS DB by Nucleotide ID:NM_001033445Re-query CCDS DB by Protein ID:NP_001028617Link to BLAST:NP_001028617.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028617.2 876 Q3UFT3-1 876 100% 0 0

Chromosomal Locations for CCDS 29091.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 21129125 21130022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21131333 21131499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21147732 21148904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21168736 21168866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21236001 21236141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 21299650 21299770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2631 nt):
ATGGACCCGGCTCCCTCGTTGGGTTGCAGCCTCAAGGATGTGAAGTGGAGCCCAGTGGCCATGCCGCTCG
ACCTGCTGGTCAGCACCTACCGGCTGCCCCAGATCGCGCGGCTGGACAGCGGAGAATGCGTGGAAGGGCT
TCGGGAGAATGATTTCCTGCTGATCCATTCATGCCGGCAGTGGACGACCATCACTGCCCATAGCCTGGAA
GAAGGTCACTATGTCATTGGGCCAAAGATAGAGATCCCTGTACATTATGCAGGACAATTCAAGCTGCTGG
AACAAGACCGGGATATAAAGGAGCCGGTGCAATATTTCAACAGCGTGGAGGAAGTGGCCAAAGCATTTCC
TGAACGTGTGTACGTCATGGAGGAGATTACATTCAACGTGAAGGTGGCGTCGGGTGAATGCAATGAAGAC
ACTGAAGTTTACAACATCACCCTGTGCACCGGGGATGAACTCACCCTAATGGGGCAGGCAGAAATCCTTT
ATGCAAAGACCTTCAAGGAGAAGTCACGTCTCAACACCATCTTCAAAAAGATTGGGAAGCTCAATTCCAT
CAGCAAGCTGGGGAAAGGCAAAATGCCCTGCCTCATTTGCATGAATCACCGGACCAATGAAAGCATCAGC
CTTCCATTCCAGTGCAAGGGCAGATTTAGCACCCGAAGTCCCCTGGAACTTCAGATGCAGGAAGGGGAAC
ACACCATCCGAAACATCGTGGAGAAGACTCGACTCCCCGTGAATGTGACAGTGCCCAGTCCCCCACCCAG
AAATCCCTATGACCTCCACTTCATTAGAGAGGGGCACCGCTACAAGTTTGTGAACATCCAGACCAAGACA
GTGGTGGTTTGTTGTGTGCTGCGCAACAACAAGATCCTCCCCATGCACTTCCCTTTGCACTTGACTGTCC
CCAAGTTCAGCCTCCCGGAACACCAGGTGAAGGGAGACATGTGGCCAGAAACACTAGTCCATCACTGGCT
TGGTATCTGCCAAGAGCAGTTTGACATCGATGAGTATTCACGGGCTGTGCGTGATGTGAAAACGGACTGG
AATGAAGACTGCAAGAGCCCCAAAAAGGGCCGCTGCTCTGGCCACAACCATTTACCCAATTCCCTCAGCT
ATGCCCGCGATGAGCTCACCCAGTCCTTCCACCGACTCTCAGTCTGTGTGTATGGCAACAATCTCCATGG
CAATAGTGAGGTGAATCTCCATGGCTGCAGGGACCTTGGGGGAGAGTGGGCCCCTTTTCCCCATGATATC
CTTCCCTATCAAGACTCTGGTGACAGTGGGAGCGACTACCTTTTCCCGGAAGCTAATGAGGAGTCAGCGG
GCATCCCGGGGAAAACAGAAGTTCCCTATGAAGAGCTGTGGCTGGAGGAAGGCAAGCCCAGCCGCCAGCC
TCTCACTCGCTCACTCAGTGAGAAGAGCAGGTGCGACACCTTGAGAGGCTCCACGAGGTCCACGTGTGCA
CCCTCTTCTCCTCCCACCCCTGCGACCCTGGGAGCCACAATTAAGTCTTCAGAAATCGCCCTACCTCCAC
CTCCAGTGCCTCCCAAATCTGAAGCTGTCAGGGAAGAATGCCGGCTCCTGAACGCCCCACCTGTGCCGCC
CCGAAGTGCAAAGCCTTTGTCCACAAGTCCCTCCATCCCTCCTCGAACAGTCAAGCCAGTCCGGCCACAG
ACGAGATCTCCAAGCCCCACCCTGTCTTACTATTCTTCAGGACTGCATAACATCATCACTCAGAGTGATA
CAAGTCCTCCCAACAGTGCCCCTGTGTCCTGCTACCCCTGCACCCGAGTGAAGAGTGACTCTGTGGACCC
CAAGTCCCCATTTGGAAGTCCTTCCGCTGAAGCTCTGTCCTCCCGGCTCTCATGGCCCAACCATTACTCA
GGAGCATCGGAGAACCAGACAAGGAGTGACTTTCTGCTCGATCCGAGCAGGAGCTACAGCTACCCCAGAC
AGAAGACACCTGGCACACCAAAGAGAACCTGCCCAGCCCCTTTTGATTTTGAGGGTTGCGAGCTCCTGGG
CAGCCCACCCAGCACGACCTCTGCAGAGTTCAGTAGCAGCGGTGTCCCCAGTTGCCCCAAGTCGGCCAGC
TACTGTCTGGAGAACTCCGAGGACAACTCCTTTGCAGCTGGCATGACCAAGCAGAGCGTCTCCTGCCCTG
CCTTACCCCCAAGGGCCCCAAAGCCAGTGGAACAGAAAGCCACCCCTGAAACATCTCCTTTGCCTCTGAA
AATTGATGGTGCTGAGGAGGACCCCACAGCAGGGTCACTGGACCTCTCGGAGGACCAGTATTTTGTCAGA
AAGGGCATGCAGGACATCTTCTCTGTCTCTTACCCTTTCTCATCTCCGCTCCACCTCCAGCTGGCCCCCA
GATCCTGTGGGGATGGTTCCCCGTGGCAGCCACCCGCTGACCTATCAGGACTCTCTATAGAGGAAGTGTC
CAAGTCTTTGCGGTTCATTGGTTTGTCTGAAGACGTCATAGCCTTCTTTGTCACTGAAAAGATCGATGGG
AATTTGCTTGTTCAATTAACAGAAGAGATCCTCTCAGAGGATTTCAAACTAAGCAAACTACAGGTAAAGA
AAATACTGCAGTTTATTAATGGCTGGAGGCCCAAGATATAG

Translation (876 aa):
MDPAPSLGCSLKDVKWSPVAMPLDLLVSTYRLPQIARLDSGECVEGLRENDFLLIHSCRQWTTITAHSLE
EGHYVIGPKIEIPVHYAGQFKLLEQDRDIKEPVQYFNSVEEVAKAFPERVYVMEEITFNVKVASGECNED
TEVYNITLCTGDELTLMGQAEILYAKTFKEKSRLNTIFKKIGKLNSISKLGKGKMPCLICMNHRTNESIS
LPFQCKGRFSTRSPLELQMQEGEHTIRNIVEKTRLPVNVTVPSPPPRNPYDLHFIREGHRYKFVNIQTKT
VVVCCVLRNNKILPMHFPLHLTVPKFSLPEHQVKGDMWPETLVHHWLGICQEQFDIDEYSRAVRDVKTDW
NEDCKSPKKGRCSGHNHLPNSLSYARDELTQSFHRLSVCVYGNNLHGNSEVNLHGCRDLGGEWAPFPHDI
LPYQDSGDSGSDYLFPEANEESAGIPGKTEVPYEELWLEEGKPSRQPLTRSLSEKSRCDTLRGSTRSTCA
PSSPPTPATLGATIKSSEIALPPPPVPPKSEAVREECRLLNAPPVPPRSAKPLSTSPSIPPRTVKPVRPQ
TRSPSPTLSYYSSGLHNIITQSDTSPPNSAPVSCYPCTRVKSDSVDPKSPFGSPSAEALSSRLSWPNHYS
GASENQTRSDFLLDPSRSYSYPRQKTPGTPKRTCPAPFDFEGCELLGSPPSTTSAEFSSSGVPSCPKSAS
YCLENSEDNSFAAGMTKQSVSCPALPPRAPKPVEQKATPETSPLPLKIDGAEEDPTAGSLDLSEDQYFVR
KGMQDIFSVSYPFSSPLHLQLAPRSCGDGSPWQPPADLSGLSIEEVSKSLRFIGLSEDVIAFFVTEKIDG
NLLVQLTEEILSEDFKLSKLQVKKILQFINGWRPKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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