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Report for CCDS58370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58370.1 Public Homo sapiens 15 USP3 24 110 108 CCDS HistoryNCBI Gene:9960Re-query CCDS DB by CCDS ID:58370.1Re-query CCDS DB by GeneID:9960See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 58370.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540797.5 ENSP00000445828.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540797.5Link to Ensembl Protein Viewer:ENSP00000445828.1Re-query CCDS DB by Nucleotide ID:ENST00000540797Re-query CCDS DB by Protein ID:ENSP00000445828
Original member Current member NCBI NM_001256702.2 NP_001243631.1 Accepted alive Link to Nucleotide Sequence:NM_001256702.2Link to Protein Sequence:NP_001243631.1Re-query CCDS DB by Nucleotide ID:NM_001256702Re-query CCDS DB by Protein ID:NP_001243631Link to BLAST:NP_001243631.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243631.1 476 Q9Y6I4-2 476 100% 0 0

Chromosomal Locations for CCDS 58370.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 63504740 63504830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63532647 63532707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63553715 63553798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63556667 63556748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63558106 63558188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63559857 63559970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63562895 63563008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63570433 63570579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63574046 63574152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63574323 63574403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63588305 63588423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63588702 63588815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63588944 63589011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63590661 63590826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGAGTGTCCACACCTGAGCTCCAGCGTCTGCATTGCTCCGGACTCAGCCAAGTTCCCCAACGGCTCCC
CGTCGTCCTGGTGCTGCAGCGTGTGCCGGTCCAACAAAAGCCCTTGGGTCTGTTTGACTTGTTCAAGTGT
CCACTGTGGAAGTTATCGCTGTGATGATTTTGTGGTTAATGACACCAAGCTGGGACTGGTACAGAAAGTC
AGAGAACACTTACAGAACTTGGAAAACTCAGCTTTCACAGCTGACAGGCATAAGAAAAGAAAACTTTTGG
AAAACTCAACACTAAACAGCAAGTTATTAAAAGTAAATGGAAGCACCACTGCCATTTGTGCCACAGGCCT
TCGGAATTTGGGGAACACATGTTTCATGAATGCCATCCTTCAGTCACTCAGTAACATTGAGCAGTTTTGC
TGTTATTTCAAAGAACTGCCCGCCGTGGAGTTAAGGAATGGGAAAACAGCAGGAAGGCGGACATACCACA
CCAGGAGCCAAGGGGATAACAATGTGTCTTTGGTAGAAGAGTTTAGAAAGACACTCTGTGCTTTATGGCA
AGGCAGCCAGACTGCATTTAGCCCAGAGTCCTTATTTTATGTTGTTTGGAAGATTATGCCAAACTTTAGG
GGCTATCAACAGCAGGACGCCCATGAATTCATGCGCTACCTTTTGGACCACCTACACTTGGAACTTCAGG
GCGGTTTCAACGGTGTTTCCCGCTCAGCAATTCTGCAGGAGAATTCTACTCTGTCTGCAAGTAACAAGTG
TTGCATAAATGGAGCATCTACTGTTGTCACGGCTATATTCGGAGGCATTCTCCAAAATGAGGTTAACTGC
CTCATATGTGGGACAGAATCTAGAAAGTTTGATCCATTCCTAGACCTTTCATTAGATATTCCAAGTCAGT
TCAGAAGTAAGCGCTCTAAGAATCAAGAAAATGGACCAGTTTGTTCGTTACGAGATTGTCTTCGCAGTTT
TACCGACTTAGAAGAACTTGATGAGACAGAGTTATATATGTGCCATAAATGCAAAAAGAAACAAAAGTCC
ACAAAAAAGTTTTGGATTCAAAAACTACCCAAGGTGCTATGCTTACATTTGAAAAGATTTCATTGGACAG
CATATTTAAGAAATAAAGTTGATACATACGTAGAATTTCCACTGAGAGGCCTAGACATGAAATGCTACTT
ACTAGAGCCTGAGAACAGTGGCCCGGAGAGCTGCCTGTATGACCTCGCCGCTGTGGTGGTGCACCATGGT
TCCGGGGTTGGTTCTGGACATTACACAGCATACGCAACTCACGAAGGCCGCTGGTTCCACTTCAATGACA
GTACTGTAACACTGACTGACGAGGAGACTGTGGTGAAGGCGAAGGCCTACATCCTTTTCTACGTGGAACA
CCAGGCCAAAGCTGGATCGGATAAACTTTAA

Translation (476 aa):
MECPHLSSSVCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGSYRCDDFVVNDTKLGLVQKV
REHLQNLENSAFTADRHKKRKLLENSTLNSKLLKVNGSTTAICATGLRNLGNTCFMNAILQSLSNIEQFC
CYFKELPAVELRNGKTAGRRTYHTRSQGDNNVSLVEEFRKTLCALWQGSQTAFSPESLFYVVWKIMPNFR
GYQQQDAHEFMRYLLDHLHLELQGGFNGVSRSAILQENSTLSASNKCCINGASTVVTAIFGGILQNEVNC
LICGTESRKFDPFLDLSLDIPSQFRSKRSKNQENGPVCSLRDCLRSFTDLEELDETELYMCHKCKKKQKS
TKKFWIQKLPKVLCLHLKRFHWTAYLRNKVDTYVEFPLRGLDMKCYLLEPENSGPESCLYDLAAVVVHHG
SGVGSGHYTAYATHEGRWFHFNDSTVTLTDEETVVKAKAYILFYVEHQAKAGSDKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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