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Report for CCDS160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
160.1 Public Homo sapiens 1 AGMAT 24 110 108 CCDS HistoryNCBI Gene:79814Re-query CCDS DB by CCDS ID:160.1Re-query CCDS DB by GeneID:79814See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 160.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375826.4 ENSP00000364986.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375826.4Link to Ensembl Protein Viewer:ENSP00000364986.3Re-query CCDS DB by Nucleotide ID:ENST00000375826Re-query CCDS DB by Protein ID:ENSP00000364986
Original member Current member NCBI NM_024758.5 NP_079034.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024758.5Link to Protein Sequence:NP_079034.3Re-query CCDS DB by Nucleotide ID:NM_024758Re-query CCDS DB by Protein ID:NP_079034Link to BLAST:NP_079034.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079034.3 352 Q9BSE5 352 100% 0 0

Chromosomal Locations for CCDS 160.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 15573651 15573724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15574757 15574841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15577685 15577864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15578859 15579054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15580094 15580142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15583193 15583395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15584696 15584967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGCTGAGGCTGCTGGCGTCCGGGTGCGCCCGGGGCCCGGGGCCCGGCGTGGGCGCGCGTCCTGCCGCAG
GGCTCTTTCATCCGGGGCGCCGCCAGAGCCGCCAGGCTTCCGACGCGCCCCGGAACCAGCCCCCCAGCCC
CGAGTTCGTGGCCCGGCCGGTGGGCGTCTGCTCCATGATGCGCCTGCCGGTGCAGACCTCCCCCGAGGGG
CTGGACGCTGCCTTCATCGGGGTGCCCCTGGATACTGGGACCTCCAACCGGCCTGGGGCGAGATTCGGAC
CTCGCCGCATCCGGGAAGAATCAGTGATGCTTGGGACAGTCAATCCTAGCACGGGGGCCCTCCCCTTCCA
GTCCCTCATGGTTGCAGACCTAGGCGATGTGAATGTCAATCTTTACAACCTTCAGGACAGCTGCCGGCGA
ATTCAAGAGGCCTATGAGAAAATTGTAGCAGCTGGCTGTATTCCTCTGACCTTGGGTGGAGATCACACAA
TCACATATCCCATATTGCAAGCGATGGCAAAAAAGCATGGCCCAGTGGGGCTGCTGCACGTGGATGCGCA
CACGGACACGACCGACAAGGCCCTAGGAGAGAAGCTCTACCACGGGGCGCCCTTCCGCCGGTGTGTGGAT
GAGGGTCTCCTGGACTGTAAGCGTGTGGTGCAGATTGGCATCCGGGGCTCTTCCACGACCTTGGATCCCT
ACAGATACAACCGGAGCCAGGGCTTCCGGGTAGTCCTGGCTGAAGACTGCTGGATGAAGTCGCTGGTTCC
TCTGATGGGGGAAGTCAGGCAGCAGATGGGAGGCAAACCCATTTATATCAGCTTTGATATTGACGCTCTG
GATCCTGCCTATGCGCCAGGGACAGGGACACCTGAAATTGCTGGTCTCACTCCTAGTCAGGCTCTGGAGA
TCATCAGGGGTTGTCAAGGCCTGAACGTGATGGGCTGTGATCTTGTCGAAGTTTCACCACCGTATGATCT
TTCTGGGAACACAGCCCTGCTGGCGGCTAACCTGCTGTTTGAGATGCTATGTGCTCTCCCCAAAGTGACA
ACCGTCTGA

Translation (352 aa):
MLRLLASGCARGPGPGVGARPAAGLFHPGRRQSRQASDAPRNQPPSPEFVARPVGVCSMMRLPVQTSPEG
LDAAFIGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALPFQSLMVADLGDVNVNLYNLQDSCRR
IQEAYEKIVAAGCIPLTLGGDHTITYPILQAMAKKHGPVGLLHVDAHTDTTDKALGEKLYHGAPFRRCVD
EGLLDCKRVVQIGIRGSSTTLDPYRYNRSQGFRVVLAEDCWMKSLVPLMGEVRQQMGGKPIYISFDIDAL
DPAYAPGTGTPEIAGLTPSQALEIIRGCQGLNVMGCDLVEVSPPYDLSGNTALLAANLLFEMLCALPKVT
TV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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