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Report for CCDS1709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1709.1 Public Homo sapiens 2 PFN4 24 110 108 CCDS HistoryNCBI Gene:375189Re-query CCDS DB by CCDS ID:1709.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1709.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313213.5 ENSP00000322170.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000313213.5Link to Ensembl Protein Viewer:ENSP00000322170.4Re-query CCDS DB by Nucleotide ID:ENST00000313213Re-query CCDS DB by Protein ID:ENSP00000322170
Original member Current member NCBI NM_199346.3 NP_955378.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_199346.3Link to Protein Sequence:NP_955378.1Re-query CCDS DB by Nucleotide ID:NM_199346Re-query CCDS DB by Protein ID:NP_955378Link to BLAST:NP_955378.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955378.1 129 Q8NHR9 129 100% 0 0

Chromosomal Locations for CCDS 1709.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 24115583 24115611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24119577 24119682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24121163 24121300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24122419 24122535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGAGCCATTTGCAGAGCTTATTGTTAGACACCCTCTTGGGAACCAAGCATGTGGACAGTGCAGCCCTCA
TCAAAATCCAGGAGCGGAGCTTGTGTGTAGCATCACCAGGTTTCAATGTAACGCCCAGTGATGTCCGAAC
ACTGGTGAATGGATTTGCCAAGAACCCTTTGCAAGCCCGAAGAGAAGGACTGTATTTCAAGGGAAAAGAT
TACAGATGTGTCCGGGCAGATGAATATTCTCTTTATGCCAAAAATGAGAACACTGGTGTGGTTGTCGTGA
AGACCCATCTGTATCTTCTGGTAGCAACTTACACTGAGGGCATGTATCCTAGCATCTGTGTGGAAGCCAC
AGAGAGCCTGGGAGACTACCTAAGAAAAAAAGGAAGTTAA

Translation (129 aa):
MSHLQSLLLDTLLGTKHVDSAALIKIQERSLCVASPGFNVTPSDVRTLVNGFAKNPLQARREGLYFKGKD
YRCVRADEYSLYAKNENTGVVVVKTHLYLLVATYTEGMYPSICVEATESLGDYLRKKGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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