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Report for CCDS73245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73245.1 Public Homo sapiens 11 PGAP2 24 110 108 CCDS HistoryNCBI Gene:27315Re-query CCDS DB by CCDS ID:73245.1Re-query CCDS DB by GeneID:27315See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 73245.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396991.6 ENSP00000380188.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396991.6Link to Ensembl Protein Viewer:ENSP00000380188.3Re-query CCDS DB by Nucleotide ID:ENST00000396991Re-query CCDS DB by Protein ID:ENSP00000380188
Original member Current member NCBI NM_001256235.1 NP_001243164.1 Accepted alive Link to Nucleotide Sequence:NM_001256235.1Link to Protein Sequence:NP_001243164.1Re-query CCDS DB by Nucleotide ID:NM_001256235Re-query CCDS DB by Protein ID:NP_001243164Link to BLAST:NP_001243164.1

Chromosomal Locations for CCDS 73245.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3811291 3811424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3822909 3822993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3823883 3824135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3824270 3824376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3825020 3825128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3825328 3825458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGGGACCCTGGTACGGCTCCGCTTCACCATGGTGGCCCTGGTCACGGTCTGCTGTCCACTTGTCGCCTT
CCTCTTCTGCATCCTCTGGTCCCTGCTCTTCCACTTCAAGGAGACAACGGCCACACACTGTGGGGACTGA
AGCTTCAATAGGAGTTCCAGGCATTAAGATGGATGGTGGAGATGCACAAGAACATGGTCATTTCCTTAGA
CTACCCCAGGTGCCCAATTACCTGCCCTCGGTGAGCTCAGCCATCGGCGGGGAGGTGCCCCAGCGCTACG
TGTGGCGTTTCTGCATCGGCCTGCACTCGGCGCCTCGCTTCTTGGTGGCCTTCGCCTACTGGAACCACTA
CCTCAGCTGCACCTCCCCGTGTTCCTGCTATCGCCCGCTCTGCCGCCTCAACTTCGGCCTCAATGTCGTG
GAGAACCTCGCGTTGCTAGTGCTCACTTATGTCTCCTCCTCCGAGGACTTCACCATCCACGAAAATGCTT
TCATTGTGTTCATTGCCTCATCCCTCGGGCACATGCTCCTCACCTGCATTCTCTGGCGGTTGACCAAGAA
GCACACAGTAAGTCAGGAGGATCGCAAGTCCTACAGCTGGAAACAGCGGCTCTTCATCATCAACTTCATC
TCCTTCTTCTCGGCGCTGGCTGTCTACTTTCGGCACAACATGTATTGTGAGGCTGGAGTGTACACCATCT
TTGCCATCCTGGAGTACACTGTTGTCTTAACCAACATGGCGTTCCACATGACGGCCTGGTGGGACTTCGG
GAACAAGGAGCTGCTCATAACCTCTCAGCCTGAGGAAAAGCGATTCTGA

Translation (272 aa):
MGPWYGSASPWWPWSRSAVHLSPSSSASSGPCSSTSRRQRPHTVGTEASIGVPGIKMDGGDAQEHGHFLR
LPQVPNYLPSVSSAIGGEVPQRYVWRFCIGLHSAPRFLVAFAYWNHYLSCTSPCSCYRPLCRLNFGLNVV
ENLALLVLTYVSSSEDFTIHENAFIVFIASSLGHMLLTCILWRLTKKHTVSQEDRKSYSWKQRLFIINFI
SFFSALAVYFRHNMYCEAGVYTIFAILEYTVVLTNMAFHMTAWWDFGNKELLITSQPEEKRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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